PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G14620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 368aa    MW: 39523.7 Da    PI: 10.0117
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G14620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.48e-2359148186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +Wt++e+laLiea+r+++e+lr+g+l++ +W++v+ ++        +  ++s +qC++k+e+l+kry+++++++ +r+  +  ++p+f  l+
  LPERR10G14620.1  59 CWTHEETLALIEAYRDRWEALRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERNRAAGRS--KPPKWPFFPLLH 148
                      8*************************************99998888899**************************985..4457****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2158149No hitNo description
PROSITE profilePS500905.99360122IPR017877Myb-like domain
SMARTSM005951.8E-567151IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSSSSSPPPN PDAISSPDLP PLATPLAAAA AAAAAAASSG PSSAAGGGGG SGRRLPPPCW  60
THEETLALIE AYRDRWEALR KGNLRASDWD DVAGAVTARC GRFPTATHKS GVQCRHKIEK  120
LRKRYRAERN RAAGRSKPPK WPFFPLLHDL AGGGGPEPGS NPIIKIKSKG SGASAAAAAA  180
SPASLSPLSS ESDEAEEGRS RSLHGLISNG GNGSGSGGGL RFTIPKASRS KAPPPPKLEK  240
REEEEEEDEE DAEAEAMAEV ASALRAVGDK FLRMEERRLE MALQIEKERM ESEMKRTQTL  300
LDAQQLFVEA FLSKQQQQHH HHHHKKAKVR VCVHFVFGGK TSNPRGMKRP PSFVMMCRFL  360
RSCLALQL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G14620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574347.11e-143trihelix transcription factor ASIL2
TrEMBLA0A0D9XMJ40.0A0A0D9XMJ4_9ORYZ; Uncharacterized protein
STRINGLPERR10G14620.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-22Trihelix family protein