PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G15300.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 710aa    MW: 75991.8 Da    PI: 6.6458
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G15300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12531576454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  LPERR10G15300.1 531 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 576
                      799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-5163243IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39527576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.02E-14530577No hitNo description
SuperFamilySSF474593.66E-18530602IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-18531598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-10531576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-15533582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MNLWTDDNGT MMMEAFMNSD PPFPWVGANA STPPPPPPPP QMAVAPAAPA TAAAAAAFNQ  60
DTLQQRLQSI IEGSRETWTY AIFWQSSIDV TTGASLLGWG DGYYKGCDED KRKQRSSTPA  120
AAAEQEHRKR VLRELNSLIA GAGAAPDEAV EEEVTDTEWF FLVSMTQSFP NGLGLPGQAL  180
FAGQPTWIAA GLSSAPCERA RQAYTFGLRT MVCLPLASGV LELGSTDVIF QTGDSIGRIR  240
GLFNLNGGGG GGGVAWPAAQ QQQQETDPSV LWLADGPGID MKDSISGAEI SVSKPQQQQQ  300
IQHFENGSSS TLTENPSPSV HAPPAPPAAA PMHRQHQHQQ QSSQAQQGPF RRELNFSDFA  360
SNGGGGGGVA PPFFKPETGE ILNFGNDGIS RRNPSPAPPA SLTTAPGSLF SQHTAAANAD  420
AKSNNNNQKR SMEATSRASN TNNHHHHHLS AATTTTTATT ANEGMLSFSS APTGGTTGAP  480
AKSESDHSDV EASVREVESS RVVAPPPPPD AEKRPRKRGR KPANGREEPL NHVEAERQRR  540
EKLNQRFYAL RAVVPNVSKM DKASLLGDAI SYINELRGKM TSLETDKETL HAQIEALKKE  600
RDARPPAPAT AAAIDGGARC HAVEIEAKIL GLEAMIRVQC HKRNHPAARL MTALRELELD  660
VYHASVSVVK DLMIQQVAVK MATRVYSQDQ LNAALYSRIA EPTGSAVTRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-61582464195Transcription factor MYC3
4rqw_B2e-61582464195Transcription factor MYC3
4rs9_A2e-61582464195Transcription factor MYC3
4yz6_A2e-61582464195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512520KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G15300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614012.20.0transcription factor MYC2-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0D9XMU60.0A0A0D9XMU6_9ORYZ; Uncharacterized protein
STRINGLPERR10G15300.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-69bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]