PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G15640.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 265aa    MW: 29411 Da    PI: 7.1518
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G15640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.7e-31143201259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp++++itY+++Hnh+
  LPERR10G15640.1 143 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRADPTMLVITYTSDHNHP 201
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.214137203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-31140203IPR003657WRKY domain
SuperFamilySSF1182906.28E-26141203IPR003657WRKY domain
SMARTSM007741.1E-36142202IPR003657WRKY domain
PfamPF031061.6E-25144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MCDNMFWQSA ADQGELLDVV RPRHPDISNS PYLLVEAAGG EQQRQIAAAS HGDVDGNEQQ  60
QQHCEGLLHA VLPPPLQPMI HHDQDRVLEE EPAGGAQAEL MFGDHQQQAP PPMKRRRSET  120
RKKVVCIPAA TSSAGGGGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV  180
ERSRADPTML VITYTSDHNH PWPTHRNALA GSTRPSAAPP TPPPAITTHH LKHEEEVHQL  240
PHHQLLQYPA DHLLFHCPPS FGFFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23122204680Disease resistance protein RRS1
5w3x_D2e-23122204680Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G15640.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9546101e-104KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662643.19e-76PREDICTED: probable WRKY transcription factor 35 isoform X1
TrEMBLA0A0D9XMY20.0A0A0D9XMY2_9ORYZ; Uncharacterized protein
STRINGLPERR10G15640.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-52WRKY DNA-binding protein 35