PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G00960.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 518aa    MW: 57880.3 Da    PI: 9.4402
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G00960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.61.4e-19194258259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK++  s+++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  LPERR11G00960.1 194 NDGHQWRKYGQKSISRSKHSRSYYRCANSkvqGCPATKTVQQMNSSGngtlKLFNVDYYGQHTCR 258
                      8*************************9887889********99877622335899*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-22179258IPR003657WRKY domain
PROSITE profilePS5081115.262188238IPR003657WRKY domain
SuperFamilySSF1182901.96E-19189258IPR003657WRKY domain
SMARTSM007746.3E-29193259IPR003657WRKY domain
PfamPF031064.8E-22194258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MEVGRGAQAT VVWTLLVHLS FLSFPHLYTL PSDIDGDDGD AMDGIEREAA RLQHSRKKLY  60
GTGPMIGAQK NTIVHCLHQL QHDCQVVIDM IEHQKALMVE LHGIVMPILP SGNDQTKLAV  120
QLLGDILSCS DKAISMLEFG SDTNKLTNIV GGKRRSDKHS MENQNLEEGP KEIGNKRRKN  180
AEHTGSTVAQ APHNDGHQWR KYGQKSISRS KHSRSYYRCA NSKVQGCPAT KTVQQMNSSG  240
NGTLKLFNVD YYGQHTCRGD GIASPYVVDT AHHNMEPNNQ TKCNSPTPEH EVQDERFQNL  300
CMVPNMPEHL IEFEMERAFE FTMNSRLDTE HWMFDDSVAA TAETQLRRQG RICYARPTRS  360
MNPMHTVTVP VCCETGMQGD LSQQNQPGEK AILPSRIQGL FSEEGVEEKE AGEGGRCGGG  420
AGRLGAGERG KKCGQGWIGG QISKVGKRYG DLRTRWRRRY REGGSHKPQR RARRHGRRGG  480
TSRRGREGLR AKKTDKHRDF IAKLPRKQAD SMGAVYGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413419GGRCGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G00960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XNF10.0A0A0D9XNF1_9ORYZ; Uncharacterized protein
STRINGLPERR11G00960.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-18WRKY DNA-binding protein 46