PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G01210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 296aa    MW: 32702.3 Da    PI: 6.5784
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G01210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS244.63.9e-75392592232
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 
                       +lLl+cAe v++++l +a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lp s+ + ++ + +++aa+++f+ +sP++kfs
  LPERR11G01210.1  39 LTLLLQCAESVNADNLDEAHRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNSSPAATRlHGRVAAAFQVFNGISPFVKFS 132
                      579************************************************************6665555554899999*************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++++Tg+g+    s e+le+tg+rL++fA++lg+pfef + va++  +
  LPERR11G01210.1 133 HFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPSGPPRVKLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VADKAGN 221
                      *******************************************************....***************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk 232
                      l++e+L v ++Ea+aV++    h+l+d ++s ++    +L+l++
  LPERR11G01210.1 222 LDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQ 259
                      ******************98..888888888777....666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.25612296IPR005202Transcription factor GRAS
PfamPF035141.4E-7239259IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MPAACCCWQE TAAAAATAAK ERKEEQRRKQ RDEEGLHLLT LLLQCAESVN ADNLDEAHRA  60
LLEIAELATP FGTSTQRVAA YFAEAMSARL VSSCLGLYAP LPNSSPAATR LHGRVAAAFQ  120
VFNGISPFVK FSHFTANQAI QEAFEREERV HIIDLDIMQG LQWPGLFHIL ASRPSGPPRV  180
KLTGLGASME ALEATGKRLS DFADTLGLPF EFCPVADKAG NLDPEKLGVT RREAVAVHWL  240
RHSLYDVTGS DSNTLWLIQR YTHIQYSLCL LFFFLPLVNS SPGIMATFQP THYYSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-126222603240Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G01210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620600.11e-160protein SCARECROW 2
SwissprotA2ZAX51e-163SCR1_ORYSI; Protein SCARECROW 1
TrEMBLA0A0D9XNK10.0A0A0D9XNK1_9ORYZ; Uncharacterized protein
STRINGLPERR11G01210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-120GRAS family protein