PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR11G01220.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GRAS

Protein Properties

Length: 144aa MW: 15501.8 Da PI: 7.6842

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR11G01220.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	23.2	7.4e-08	2	32	344	374
GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++sdgy++ ee+g+l lgWkd L+++SaWr LPERR11G01220.1 2 FPSDGYTLIEENGALKLGWKDLCLLTASAWR 32 679***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	2.6E-5	2	32	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MFPSDGYTLI EENGALKLGW KDLCLLTASA WRPIQASVRE ELLFLCVCTA QKKAVLLKKA 60 AVQCTSLPCQ CPTYGQSHQV VSIAIGRSTL LVPGGHGEKT TTAAATGRQC NGFGPVEEMW 120 AEKDHPTAIG TQTGTFPENK NYVC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR11G01220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB180961	3e-32	AB180961.1 Oryza sativa Japonica Group OsSCR mRNA for SCARECROW, complete cds.
GenBank	AC123519	3e-32	AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence.
GenBank	AK073467	3e-32	AK073467.1 Oryza sativa Japonica Group cDNA clone:J033044H21, full insert sequence.
GenBank	AP014967	3e-32	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	CP012619	3e-32	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9XNK2	1e-103	A0A0D9XNK2_9ORYZ; Uncharacterized protein
STRING	LPERR11G01220.1	1e-103	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	2e-14	GRAS family protein