PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G02100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 127aa    MW: 14672.6 Da    PI: 4.7908
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G02100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.35.8e-101210132126
              NAM  32 evikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121
                      + i+++d+y  eP+dL       v+ e+ + +fF++ ++++     ++r++ +g+W    +  ev++++g +vg  +++ f     + g+ t+W
  LPERR11G02100.1  12 SLIHHADLYGGEPNDLAGmfapVVRCENGDRFFFTSCKRQNG----SERKAGDGTWVWLNN-MEVKNEEGVKVGEMQSFRFM----KYGRYTEW 96 
                      4699************843666555566688***99988764....6788899***98765.889999*************9....67889*** PP

              NAM 122 vmhey 126
                      vm+e 
  LPERR11G02100.1  97 VMEEH 101
                      ***96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.9151123IPR003441NAC domain
SuperFamilySSF1019411.16E-149123IPR003441NAC domain
PfamPF023652.6E-533100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MSEFVFDRVT PSLIHHADLY GGEPNDLAGM FAPVVRCENG DRFFFTSCKR QNGSERKAGD  60
GTWVWLNNME VKNEEGVKVG EMQSFRFMKY GRYTEWVMEE HPCAVQQAKA TDEEPVICRM  120
YMSPMLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G02100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619129.19e-50NAC domain-containing protein 41
TrEMBLA0A0D9XNW66e-92A0A0D9XNW6_9ORYZ; Uncharacterized protein
STRINGLPERR11G02100.11e-92(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799