PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G02280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 219aa    MW: 24217.9 Da    PI: 11.3351
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G02280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS109.44.9e-348127217335
             GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerh 309
                      + +++ +  ++L++v+slsPk+vv +eq+adhn+ sF +rf +a+++y+a+fdsl +a+    ++e + vEr+++g+e + v+  ega rrerh
  LPERR11G02280.1   8 HYETPAPLARFLSAVRSLSPKIVVAAEQDADHNGVSFHKRFRKAIHHYAAVFDSLdAASHLLPADELARVERVVVGEEMKGVLLREGAPRRERH 101
                      4455556778*********************************************44444455699999************************* PP

             GRAS 310 etlekWrerleeaGFkpvplsekaak 335
                       +l++W  r+e+aGF  vpls+ a  
  LPERR11G02280.1 102 DRLRHWAYRMEMAGFAGVPLSYVAIR 127
                      *********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.3661146IPR005202Transcription factor GRAS
PfamPF035141.7E-318127IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAELISHHYE TPAPLARFLS AVRSLSPKIV VAAEQDADHN GVSFHKRFRK AIHHYAAVFD  60
SLDAASHLLP ADELARVERV VVGEEMKGVL LREGAPRRER HDRLRHWAYR MEMAGFAGVP  120
LSYVAIRKGN DMYWAKSGSI SCHRKIGIHP FQDGPILMGS KPKSPNGPLL GKAFSPRRGT  180
TTLLRHVNRV GRLAAAAAAA SAIHRTTPLL FSRSRRQAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-139122225335Protein SCARECROW
5b3h_A1e-139122224334Protein SCARECROW
5b3h_D1e-139122224334Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G02280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619131.16e-56scarecrow-like protein 3
TrEMBLA0A0D9XNY61e-158A0A0D9XNY6_9ORYZ; Uncharacterized protein
STRINGLPERR11G02280.11e-158(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.18e-29scarecrow-like 3