PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G02510.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 452aa    MW: 50600.3 Da    PI: 4.693
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G02510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.61.3e-28311652128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya.tgkrknra.....tksgyWkatgk 88 
                      p G+rF Ptdeel++ yL+ k+eg+  +l +v++evdi++++P+ L  +  + +ek+w+fF+  + +++ ++ ++nr+     +++g W+atg+
  LPERR11G02510.1  31 PSGIRFLPTDEELIDVYLRSKIEGRMPPL-DVVNEVDIMRCDPEILIdAYKSYGEKRWFFFTVWEPSKTkKKGEPNRKvvvddVEEGSWSATGS 123
                      89************************999.99**************8344444889*****987665551577889965666677********* PP

              NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++s+    +++ +g+k++L++ + r+p+  + +W mhey +
  LPERR11G02510.1 124 VTHIHSTkemnRKAIIGTKRVLTYRSVRSPE--NEKWSMHEYVM 165
                      *****9877766667**********999999..899******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-3223182IPR003441NAC domain
PROSITE profilePS5100533.24430182IPR003441NAC domain
PfamPF023656.5E-1731164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MENVGGGSDG LAAPAGRGSR KHELVPQLQF PSGIRFLPTD EELIDVYLRS KIEGRMPPLD  60
VVNEVDIMRC DPEILIDAYK SYGEKRWFFF TVWEPSKTKK KGEPNRKVVV DDVEEGSWSA  120
TGSVTHIHST KEMNRKAIIG TKRVLTYRSV RSPENEKWSM HEYVMAGKSQ MGQYVVCAIQ  180
LKQTYEAEKK AAEEKSSTNK RNRKAARKGR RDMQPTSQSQ DQEQQETPPP VHEETTGNLE  240
FNYAPSMPMM FPEGGGEDTL LKSLFAAPFN DGIVQAVQQE NYAVQEPMLY SQEPLPFANQ  300
PTITQWQCCC GNCPHCYLRQ HSQRPENASV ALGQQYDRAW VQNTVVYPNY NSLIPDGNME  360
DHAQNQIYNQ VNGAVLIEET GDSTTVHGNL MLSEQMASSS DDVAGCDYEV GQSVYDTDIS  420
LYINDFFLDG NGDGDSVVKP DGSNQTSLQG SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-17181845167NO APICAL MERISTEM PROTEIN
1ut4_B6e-17181845167NO APICAL MERISTEM PROTEIN
1ut7_A6e-17181845167NO APICAL MERISTEM PROTEIN
1ut7_B6e-17181845167NO APICAL MERISTEM PROTEIN
3swm_A7e-17181848170NAC domain-containing protein 19
3swm_B7e-17181848170NAC domain-containing protein 19
3swm_C7e-17181848170NAC domain-containing protein 19
3swm_D7e-17181848170NAC domain-containing protein 19
3swp_A7e-17181848170NAC domain-containing protein 19
3swp_B7e-17181848170NAC domain-containing protein 19
3swp_C7e-17181848170NAC domain-containing protein 19
3swp_D7e-17181848170NAC domain-containing protein 19
4dul_A6e-17181845167NAC domain-containing protein 19
4dul_B6e-17181845167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G02510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XP140.0A0A0D9XP14_9ORYZ; Uncharacterized protein
STRINGLPERR11G02510.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-20NAC domain containing protein 32