PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G03740.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 315aa    MW: 32518.5 Da    PI: 5.0417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G03740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20131180255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++aa+++++g
  LPERR11G03740.1 131 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFDTAEAAARAYDAAALQFRG 180
                      7********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-35131194IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22131189IPR016177DNA-binding domain
PfamPF008473.6E-14131180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-32131189IPR001471AP2/ERF domain
PROSITE profilePS5103225.594131188IPR001471AP2/ERF domain
PRINTSPR003677.1E-12132143IPR001471AP2/ERF domain
CDDcd000189.78E-13139190No hitNo description
PRINTSPR003677.1E-12154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MCCGKVAGPP GQQLPPLAGA GGEEEEEDQE VAVGMLSRHG QEREMSMMVS ALATVVAGGG  60
SAAEETAAWW SAYGRESLPP SSSASSATHD HSASMAASAR HAPATSTASP HEQQASSPSA  120
DAGGGGTGRR RYRGVRQRPW GKWAAEIRDP HRAARVWLGT FDTAEAAARA YDAAALQFRG  180
CRAKLNFPED AALLPPPPPE TTTTMTQSSS SSQGGMVGGE TDEYSEYARF LQGGGAAPHF  240
VEQVMGASPR PSTAAAAGDS SFPLLYSFAG HEGGDGENVP RPPESGGGDG GGGRGYKPAT  300
WPDWRAPPPQ WDPSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21132188663ATERF1
3gcc_A6e-21132188663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G03740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-73CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617618.13e-65ethylene-responsive transcription factor ERF110
TrEMBLA0A0D9XPH10.0A0A0D9XPH1_9ORYZ; Uncharacterized protein
STRINGLPERR11G03740.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169991212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-20ethylene response factor 110