PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G04670.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 330aa    MW: 35851.1 Da    PI: 4.9721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G04670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.29.5e-51101341128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd+elv++yL++k+ g +l +  vi+evd+yk++PwdLp+++ ++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v s
  LPERR11G04670.1  10 LPPGFRFHPTDDELVMYYLCRKCGGLPLAA-PVIAEVDLYKFNPWDLPERAMGGEKEWYFFSPRDRKYPNGQRPNRAAGTGYWKATGADKPVGS 102
                      79*************************999.89***************8888999*************************************99 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + v +kk Lvfy g+ pkg+kt+W+mheyrl
  LPERR11G04670.1 103 --PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 134
                      ..779***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-616165IPR003441NAC domain
PROSITE profilePS5100558.6310165IPR003441NAC domain
PfamPF023651.4E-2511134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDCGGGALQL PPGFRFHPTD DELVMYYLCR KCGGLPLAAP VIAEVDLYKF NPWDLPERAM  60
GGEKEWYFFS PRDRKYPNGQ RPNRAAGTGY WKATGADKPV GSPRPVAIKK ALVFYAGKPP  120
KGVKTNWIMH EYRLADVDRS AAARKNKSNN ALRLDDWVLC RIYNKKGVIE RYDTVDDDDV  180
KPAATVSPAP AKGARLFGGG SPAAMKVELS DYGFYDDQEH ESTEMLCFDR SGSTDRDSPP  240
PPQPMQTATD STGSEHVLSP SPDFDYAESQ PSYGGGAGGW PGVDWAGCGD DGFVIDSSLF  300
ELPSPAAFGR GGGGDGAGFG DMFTYLQKPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-76817113174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G04670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617286.11e-180NAC domain-containing protein 71
SwissprotQ53NF70.0NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLA0A0D9XPV00.0A0A0D9XPV0_9ORYZ; Uncharacterized protein
STRINGLPERR11G04670.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-95NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]