PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G05260.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 440aa    MW: 50133.2 Da    PI: 10.2174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G05260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-16721531198
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +  +l++p +f +  ++++++  +++l d++ ++W v+l    ksg++++  GWkeF ++n +++g fvvF + ++sef   v+vf+
  LPERR11G05260.1  72 QSMEILRIPPPFNRYLQNQPTG--MVSLVDRNDNTWIVEL--IYKSGEFFFVHGWKEFIRDNSIETGQFVVFNYAKQSEF--SVTVFK 153
                      445679******9555777766..8***************..888999**************************988888..777775 PP
2B3543e-17327418398
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++ s+v     + +p +f++e+   +++sk+ltl d++g+sW+v++ y   ++   +++GW +F+  n+L+  D++vF+l+++++   +v++
  LPERR11G05260.1 327 QIMMESYVYVGFFMNIPCDFVREYL--PRTSKMLTLWDPQGKSWKVNYVYYSDRSVGSFSGGWGKFAIGNNLEKFDVCVFELIQKDN--IKVHI 416
                      6789999999**************6..46889****************995555556799**********************98544..57887 PP

                      E- CS
               B3  97 fr 98 
                      +r
  LPERR11G05260.1 417 YR 418
                      76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.38162155IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-2063155IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-2063155IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-1464153No hitNo description
SMARTSM010191.1E-1264155IPR003340B3 DNA binding domain
PfamPF023624.5E-1474152IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-26317418IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-26318418IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-24323418No hitNo description
SMARTSM010195.8E-17325420IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578325420IPR003340B3 DNA binding domain
PfamPF023622.1E-15327418IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAAFLCLCVA SRGSQHDRSR LREGERRSVK RSKNQEGERR GVKRSRRSRS EKEEQRNDAL  60
GMSFFRVILT EQSMEILRIP PPFNRYLQNQ PTGMVSLVDR NDNTWIVELI YKSGEFFFVH  120
GWKEFIRDNS IETGQFVVFN YAKQSEFSVT VFKLSGIENT LPNSARVSKK VIIKIESDDV  180
DTDNAATNEE RMAPPLKESN INTGKRIIDA DSLMEDRAPL KKSSDANVAG SSKRKRGASV  240
GKSKASPTSH NSTKGSSCDM SDEDSKLPKA QPILMQFQNG DIARRGLSKG QRQLAVISQR  300
RPVTEGEKDH ALQRAKDFKS KNPFAVQIMM ESYVYVGFFM NIPCDFVREY LPRTSKMLTL  360
WDPQGKSWKV NYVYYSDRSV GSFSGGWGKF AIGNNLEKFD VCVFELIQKD NIKVHIYRVV  420
PEITPHKLRS DRIPLLLAMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1629841922142B3 domain-containing transcription factor VRN1
4i1k_B4e-1629841922142B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531RRSVKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G05260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0675711e-139AK067571.1 Oryza sativa Japonica Group cDNA clone:J013108N22, full insert sequence.
GenBankAK1019411e-139AK101941.1 Oryza sativa Japonica Group cDNA clone:J033074I03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615373.10.0B3 domain-containing protein Os11g0197600
SwissprotQ2R9D20.0Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A0D9XQ220.0A0A0D9XQ22_9ORYZ; Uncharacterized protein
STRINGLPERR11G05260.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-26B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]