PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G10480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 545aa    MW: 58682.2 Da    PI: 8.6757
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G10480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-10159182326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++ C++++rtG C++G +CkF+H+
  LPERR11G10480.1 159 EPDCSYYMRTGLCRFGMTCKFNHP 182
                      789********************8 PP
2zf-CCCH38.52e-12204228327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  LPERR11G10480.1 204 QPECQYYLKTGTCKFGATCKFHHPR 228
                      799********************96 PP
3zf-CCCH38.22.3e-12250274327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C++++rtG+Ck+G++CkF+H++
  LPERR11G10480.1 250 EKECSYYLRTGQCKFGSTCKFHHPQ 274
                      679********************97 PP
4zf-CCCH39.21.2e-12411436227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  LPERR11G10480.1 411 DQPECQFYMKTGDCKFGAVCKFHHPK 436
                      689*********************96 PP
5zf-CCCH38.12.6e-12456482127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  LPERR11G10480.1 456 PGEPICTFYSRYGICKFGPNCKFDHPM 482
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.5E-4156183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065156184IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8159182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5161184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4162183IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6201228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244201229IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-10204228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6204230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5207229IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5247274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6247275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854247275IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10250274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4253273IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5409436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511409437IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9411436IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5412437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4415436IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6454481IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7455482IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178455483IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9457482IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4460480IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MAAAPSAVGE GGGSSSSTAA QAAATIGPHG VDEGFGRGHG GSACGRAGPT NAADGGDTVV  60
SVAGGGEGLL GLFSWRAVYE RSAGSMTEWE TRRRCCWVGT LLRVEKGRFL SGIGVPLPSG  120
ALCLSCYRNA DRFHAVDRLF VMNLGEAMEA GPYPERVGEP DCSYYMRTGL CRFGMTCKFN  180
HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA TCKFHHPREK AAMATRVQLN  240
ALGYPLRPNE KECSYYLRTG QCKFGSTCKF HHPQPSNTMV AVRGSVYSPG QSVTSPGQHT  300
YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV PGWNPYAAQI GSSSSDDQQR  360
TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV QRESIFPERP DQPECQFYMK  420
TGDCKFGAVC KFHHPKERII PTPNCALSSL GLPLRPGEPI CTFYSRYGIC KFGPNCKFDH  480
PMGTVMYGLA TSPTGDVPTA RRMLGPVPAH SEVSPDNVSG RSRRITHSDS QQIPSVERSA  540
EREAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G10480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D9XRZ00.0A0A0D9XRZ0_9ORYZ; Uncharacterized protein
STRINGLPERR11G10480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-151zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]