PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G10480.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 442aa    MW: 47967 Da    PI: 8.5087
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G10480.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.9e-115679326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C++++rtG C++G +CkF+H+
  LPERR11G10480.2 56 EPDCSYYMRTGLCRFGMTCKFNHP 79
                     789********************8 PP
2zf-CCCH38.81.5e-12101125327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  LPERR11G10480.2 101 QPECQYYLKTGTCKFGATCKFHHPR 125
                      799********************96 PP
3zf-CCCH38.61.8e-12147171327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C++++rtG+Ck+G++CkF+H++
  LPERR11G10480.2 147 EKECSYYLRTGQCKFGSTCKFHHPQ 171
                      679********************97 PP
4zf-CCCH39.59.1e-13308333227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  LPERR11G10480.2 308 DQPECQFYMKTGDCKFGAVCKFHHPK 333
                      689*********************96 PP
5zf-CCCH38.42e-12353379127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  LPERR11G10480.2 353 PGEPICTFYSRYGICKFGPNCKFDHPM 379
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.5E-45380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0655381IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-85679IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-55881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-45980IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-698125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.24498126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6101127IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10101125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5104126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6144172IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854144172IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10147171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4150170IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5306333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511306334IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9308333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5309334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4312333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6351378IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7352379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178352380IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9354379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4357377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAAAPSAVGE GGGSSSSTAA QAAATIGPHG VDEEAMWQMN LGEAMEAGPY PERVGEPDCS  60
YYMRTGLCRF GMTCKFNHPA DRKMAVAAAR MKGEYPQRIG QPECQYYLKT GTCKFGATCK  120
FHHPREKAAM ATRVQLNALG YPLRPNEKEC SYYLRTGQCK FGSTCKFHHP QPSNTMVAVR  180
GSVYSPGQSV TSPGQHTYPG AVTNWPLSRS ASFIASPRWP GHSSYAQVIV PPGLVQVPGW  240
NPYAAQIGSS SSDDQQRTAG GAQYYTGSRH SETPNMGDQG MFSSYQAGSV PLGLYTVQRE  300
SIFPERPDQP ECQFYMKTGD CKFGAVCKFH HPKERIIPTP NCALSSLGLP LRPGEPICTF  360
YSRYGICKFG PNCKFDHPMG TVMYGLATSP TGDVPTARRM LGPVPAHSEV SPDNVSGRSR  420
RITHSDSQQI PSVERSAERE AS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G10480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D9XRZ10.0A0A0D9XRZ1_9ORYZ; Uncharacterized protein
STRINGOB11G20340.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]