PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G10970.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 139aa    MW: 15228.4 Da    PI: 9.6729
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G10970.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.63.2e-166413743115
              NAM  43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapk 115
                      +P + +    +e++  +fF+++++k++ +k++nra+ +g+W++tg++ +v+ k     ++ lvg+k+tLvfy+g++++
  LPERR11G10970.2  64 HPTEVQ----EEKNGKHFFTRKENKNPGDKHRNRAAGDGFWRSTGSEVPVYYKpsgggDDMLVGMKRTLVFYRGKSSS 137
                      555554....567799************************************9998777777**********999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.37519139IPR003441NAC domain
SuperFamilySSF1019419.42E-1653138IPR003441NAC domain
PfamPF023651.6E-664133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MHESRLVGVG YLPCPVMTRT ISNGLGPPYS CLEAKIAMTM VNGGVCITLV NGSTMHLPIG  60
SIFHPTEVQE EKNGKHFFTR KENKNPGDKH RNRAAGDGFW RSTGSEVPVY YKPSGGGDDM  120
LVGMKRTLVF YRGKSSSSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G10970.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.12e-32PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLA0A0D9XS543e-99A0A0D9XS54_9ORYZ; Uncharacterized protein
STRINGLPERR08G06230.12e-43(Leersia perrieri)
STRINGLPERR11G11970.11e-43(Leersia perrieri)
STRINGLPERR11G11980.11e-43(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.16e-12NAC-domain protein 101