PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G11070.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 224aa    MW: 24052.2 Da    PI: 9.5668
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G11070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1084.6e-34122180159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg+Hnh+
  LPERR11G11070.1 122 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSRDEAIVVTTYEGTHNHP 180
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-35107180IPR003657WRKY domain
SuperFamilySSF1182904.71E-30114181IPR003657WRKY domain
PROSITE profilePS5081130.974117182IPR003657WRKY domain
SMARTSM007742.9E-40122181IPR003657WRKY domain
PfamPF031061.1E-27123180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MENFPILFAT QPSSSTSSSY HFMTSSGANS HGLQAGGNGG GGLSHGLFMG SSSSSKMEDF  60
SNSKDDATRS PHDSSAGDGA GDGDGLQVAG GSGGGGGGRK RGEKKERRPR FAFQTRSQVD  120
ILDDGYRWRK YGQKAVKNNK FPRSYYRCTH QGCNVKKQVQ RLSRDEAIVV TTYEGTHNHP  180
IEKSNDNFEH ILTQMHIYSG LNPSSAASSS TLFPSSAAAS HMFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-28113181876Probable WRKY transcription factor 4
2lex_A1e-28113181876Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G11070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8282381e-140CT828238.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615223.11e-94probable WRKY transcription factor 56
TrEMBLA0A0D9XS701e-165A0A0D9XS70_9ORYZ; Uncharacterized protein
STRINGLPERR11G11070.11e-165(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.17e-55WRKY DNA-binding protein 75