PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G11330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 339aa    MW: 35981 Da    PI: 8.3481
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G11330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.36.8e-4179155278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C v+gC++dls++++yhrrhkvCe+h+k+pvv+v+g+eqrfCqqCsrfh+l efD++k+sCr+rL++hn+rrrk+q+
  LPERR11G11330.1  79 CSVDGCRSDLSRCRDYHRRHKVCETHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 155
                      **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-3373140IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.77876153IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-3878158IPR004333Transcription factor, SBP-box
PfamPF031104.8E-3179152IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEWAVTKAAS WGMAAAADDA GPTMLSFAGS SSAAAAAAEA AAALQDFSVG LIHRGAAPRP  60
AARKARAAAG GGAGGAEWCS VDGCRSDLSR CRDYHRRHKV CETHAKTPVV VVAGQEQRFC  120
QQCSRFHNLA EFDDGKKSCR KRLDGHNRRR RKPQHDVLNP RSFMPYQQVN QFSVYPQTFP  180
IADQNADALM HPLDRQAPFS ISFSGTFRAP KQFPFLQDSG SGINTGRHDH LRPFSSAEDG  240
ANITTTTRSA CNGIPHGLDP ECALSLLSSS LHPSPASISN ATAPAQFAPS TFGRIAASSS  300
QAVTTAFASD GASAGGDHVL VPAVTYEDPS QALPFSWQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-2972152484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135152KKSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G11330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617950.11e-164putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y11e-165SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A0D9XSA50.0A0A0D9XSA5_9ORYZ; Uncharacterized protein
STRINGLPERR11G11330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.15e-39SBP family protein