PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G11520.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 681aa    MW: 72734 Da    PI: 6.3542
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G11520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.44.6e-1303206801374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv+lLl+cA++vs+gd+  a + L  l+  asp gd+mqR+a++f+ ALaarl+ s++ + + +p  +++     e+l++++++++++P++kf+
  LPERR11G11520.1 320 LVHLLLACADFVSKGDHPSAVRHLHLLRRVASPLGDSMQRVASHFADALAARLSPSSTPTTAPFPFPPSP-----ETLKVYQILYQACPYIKFA 408
                      68*****************************************************877777777777766.....99***************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp  lR+Tgvg+     + +++etg+ La++A++l+vpfef++ va+rle
  LPERR11G11520.1 409 HFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPqLLRLTGVGH----PAAAVRETGRHLASLAASLRVPFEFHAAVADRLE 498
                      ******************************************9998689*******....88******************************** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                       l++ +L+ + gEalaVn v +lhr++   ++     + +L++v++  Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p++s +
  LPERR11G11520.1 499 RLRPAALQRRVGEALAVNAVNRLHRVP--AAH----LPGLLSMVRDQAPKILTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAA 586
                      **************************9..344....556******************************************************* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r+kvE+ ll++ei+nvvacegaer +rhe+l +Wr+ +e  GF+pvpls  a +q + ll  ++ +dgyr+ e++g+l+lgW+dr+++++SaWr
  LPERR11G11520.1 587 RMKVEQCLLAPEIRNVVACEGAERLARHERLDRWRRLMEGRGFEPVPLSPAAISQSQVLLGLYGaGDGYRLTEDNGCLLLGWQDRSIIAASAWR 680
                      *********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.336294659IPR005202Transcription factor GRAS
PfamPF035141.6E-127320680IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAGGNKLQQQ QQAPTSPTAS VSESNIVAAP STTTASADHH PAEAANDALA GLQALRFDGG  60
GDIDDDVEIQ SPDIALWESL FADDHHIGAG VSSAADFFMS ISSNSPLRDY MVTSSPKRDY  120
MVTSSPKRGG DYMVTSSPKR DFMVTSPRRA TISNLYAASY GGLEGGGAAQ LQYGKGKSQS  180
PLHKVSHGGG GGGELPSSFM EEAGYNLGLY HHHMPETKTI GGVNGGGGSV VTAPASSSQQ  240
QLPTLSECLA MPEPVYRGGG GEEGMAALMP PELYYGGGGF GGEGMVATMQ HQMGDSSLHS  300
MLGSVIQSEP EQEQDSGLQL VHLLLACADF VSKGDHPSAV RHLHLLRRVA SPLGDSMQRV  360
ASHFADALAA RLSPSSTPTT APFPFPPSPE TLKVYQILYQ ACPYIKFAHF TANQAIFEAF  420
HGEDRVHVVD LDILQGYQWP AFLQALAARP GGPPQLLRLT GVGHPAAAVR ETGRHLASLA  480
ASLRVPFEFH AAVADRLERL RPAALQRRVG EALAVNAVNR LHRVPAAHLP GLLSMVRDQA  540
PKILTLVEQE AGHNGPYFLG RFLEALHYYS AIFDSLDATF PADSAARMKV EQCLLAPEIR  600
NVVACEGAER LARHERLDRW RRLMEGRGFE PVPLSPAAIS QSQVLLGLYG AGDGYRLTED  660
NGCLLLGWQD RSIIAASAWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-8432767926378Protein SCARECROW
5b3h_A3e-8432767925377Protein SCARECROW
5b3h_D3e-8432767925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G11520.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616711.10.0DELLA protein RHT-1
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A0D9XSC80.0A0A0D9XSC8_9ORYZ; Uncharacterized protein
STRINGLPERR11G11520.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-97RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]