PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G11570.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 126aa    MW: 14191.3 Da    PI: 7.5982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G11570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.88.5e-23161251107
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppG+ F Pt++ lv +yL + + + +l++ e+i+e++i++++P+d+   v+++++  +fF++++ ky+ g+r+nr++ +g+W+a g++ +++ 
  LPERR11G11570.1  16 LPPGYWFCPTEDVLVINYLYPCALHAPLPC-EIITEINILQHHPSDIV-LVEESRTGKHFFTRKEMKYPGGRRNNRVAGNGFWRAPGSEVPIYY 107
                      79****************************.89**************6.677788899************************************ PP

              NAM  95 k.....kgelvglkktLv 107
                      k     ++ lvg+++tLv
  LPERR11G11570.1 108 KpghdgDNVLVGTRQTLV 125
                      9887766667******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-268125IPR003441NAC domain
PROSITE profilePS5100524.56616126IPR003441NAC domain
PfamPF023652.1E-817125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MSGISIPMVN GTMMHLPPGY WFCPTEDVLV INYLYPCALH APLPCEIITE INILQHHPSD  60
IVLVEESRTG KHFFTRKEMK YPGGRRNNRV AGNGFWRAPG SEVPIYYKPG HDGDNVLVGT  120
RQTLVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-171410513105Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G11570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.13e-53NAC transcription factor 25
TrEMBLA0A0D9XSD31e-89A0A0D9XSD3_9ORYZ; Uncharacterized protein
STRINGLPERR11G11570.12e-90(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-16NAC domain containing protein 83