PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G11950.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 770aa    MW: 86007.9 Da    PI: 7.2901
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G11950.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.9e-2466167199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + +
  LPERR11G11950.2  66 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGE 156
                      99*****************************7333.34459************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+v+v+r+
  LPERR11G11950.2 157 NGELRVGVRRA 167
                      999*****996 PP
2Auxin_resp116.52.3e-38192274183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp  Wp+SkWrsLk
  LPERR11G11950.2 192 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWPESKWRSLK 274
                      89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-4258181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-4161195IPR015300DNA-binding pseudobarrel domain
CDDcd100175.93E-2264166No hitNo description
PROSITE profilePS5086311.89966168IPR003340B3 DNA binding domain
PfamPF023621.2E-2166167IPR003340B3 DNA binding domain
SMARTSM010199.9E-2466168IPR003340B3 DNA binding domain
PfamPF065071.1E-35192274IPR010525Auxin response factor
PfamPF023095.7E-10639726IPR033389AUX/IAA domain
PROSITE profilePS5174520.244642726IPR000270PB1 domain
SuperFamilySSF542773.68E-11645718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MQLYNLPWKI PCEVMNVELK AEPDTDEVYA QLTLLPESKQ QEENGCTEEE APTAPATHVR  60
PRVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSRQ PPTQELVAKD LHGVEWRFRH  120
IFRGQPRRHL LQSGWSVFVS AKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QTNVPSSVIS  180
SHSMHLGVLA TAWHAVNTGT MFTVYYKPRT SPAEFVVPYD RYMESLKRNY SIGMRFKMRF  240
EGEEAPEQRF TGTIVGMGDS DPAGWPESKW RSLKVRWDEA SSIPRPERVS PWQIEPAVNP  300
PPINPLPVPR TKRLRPNVTA SPPDPSAVAK EAAPKVTVES EPNGMQRAFQ TQENAAPKGS  360
FGNSSELDTA QKSVMRSSGF DREKNNISTQ RKLGSDGWMQ MNRPENYSEM LSGFQPPKDV  420
QTPQGFCSLP DQITPGHSNF WHTVNAQYQD QQGNHNMFPS SWSFMPPNTG LGLNKQNYSM  480
IQEVGGLSQR AMNTKFGNGV YAAQPGRGIE QYSGAWFGHM IPSSHMDDTQ PRLIKPKPLV  540
VAHGDVQKAK GASCKLFGIH LDSPVKSELL KSPSSVVYDG TPQTPGVEWR RQDVNEVEKC  600
SDPSKTLKSL DAPQADSVPE KPLSCQQASR NMPCKSQGGS TRSCKKVHKQ GIALGRSVDL  660
TKFDGYEGLI AELDDMFDFT GELKGPNKEW MVVYTDNEGD MMLVGDDPWI EFCDMVHKIF  720
IYTREEVQRM NPGTLNSRSE DSHANSVERG SVAREMRGCV STSSLNSENC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-147129664354Auxin response factor 1
4ldw_A1e-147129664354Auxin response factor 1
4ldw_B1e-147129664354Auxin response factor 1
4ldx_A1e-147129664354Auxin response factor 1
4ldx_B1e-147129664354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G11950.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3063060.0AJ306306.1 Oryza sativa subsp. japonica mRNA for auxin response factor 1 (arf1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697998.10.0PREDICTED: auxin response factor 23
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLA0A0D9XSI10.0A0A0D9XSI1_9ORYZ; Auxin response factor
STRINGLPERR11G11950.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2