PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G14110.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 206aa    MW: 22220.6 Da    PI: 9.0287
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G14110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.52.1e-14152183332
             GATA   3 nCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                      +Cg +   Tp++Rrgpdg++tLCnaCGl ++ 
  LPERR11G14110.1 152 HCGISAkaTPMMRRGPDGPRTLCNACGLIWAN 183
                      88877778*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.6922764IPR010399Tify domain
SMARTSM009791.2E-82764IPR010399Tify domain
PfamPF062001.8E-103063IPR010399Tify domain
PfamPF062035.5E-884117IPR010402CCT domain
SMARTSM004015.8E-5144201IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-7151184No hitNo description
Gene3DG3DSA:3.30.50.107.6E-12151184IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.09E-9151184No hitNo description
PfamPF003203.9E-12152184IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDAAAAVAAM GAQMDPHGTM VAAATVPPMA SNQLTLSFQG EVYVYVFDSV SPDKVQAVLL  60
LLGGRELNPE VEFSTPGGIF NAFQRKAERN FGKKIRCSVR KEVALRMQRN RGQFTSSKPK  120
GDEATSELTA ADVSPKWGSL EGRPPSAAEG HHCGISAKAT PMMRRGPDGP RTLCNACGLI  180
WANKVPDYFE MRITVNILKT GVCIFM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G14110.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8365271e-139CT836527.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882282.16e-90GATA transcription factor 20
SwissprotQ5Z4U55e-91GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0D9XTD91e-152A0A0D9XTD9_9ORYZ; Uncharacterized protein
STRINGLPERR11G14110.11e-153(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-50ZIM-LIKE 2