PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR11G15450.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 95aa MW: 10226.5 Da PI: 4.616

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR11G15450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.3e-08	17	57	15	54
HHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +i + +++L+ +lP+ + ++K s ++L++A++YI+sL LPERR11G15450.1 17 QIAELISKLQAVLPTgN-DDANGKeTSAGDVLQEACRYIRSL 57 79999********66.6666776*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.756	2	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-8	16	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-5	17	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-8	17	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MSSSRRSRTS AAATDEQIAE LISKLQAVLP TGNDDANGKE TSAGDVLQEA CRYIRSLHRE 60 ADALSEKLAE LLLQPSDRAI NGADASDLIR TLLLM

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR11G15450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616700.1	4e-36	transcription factor ILI2 isoform X1
Swissprot	B8BLA3	4e-37	ILI2_ORYSI; Transcription factor ILI2
Swissprot	Q2R1J3	4e-37	ILI2_ORYSJ; Transcription factor ILI2
TrEMBL	A0A0D9XTX3	5e-60	A0A0D9XTX3_9ORYZ; Uncharacterized protein
STRING	LPERR11G15450.1	8e-61	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17004	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	1e-16	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]