PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G20170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 261aa    MW: 28063.2 Da    PI: 11.7792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G20170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00115274123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg++F +   L  H  +H
  LPERR11G20170.1 52 FQCRTCGRRFATFQALGGHRTSH 74
                     89*********999998888777 PP
2zf-C2H217.61.1e-05107129123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cgk+F +   L  H+r+H
  LPERR11G20170.1 107 HRCDMCGKVFATGQALGGHMRRH 129
                      79********************9 PP
3zf-C2H212.30.0005169191123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cg++F+++  L  H  +H
  LPERR11G20170.1 169 FECRTCGRRFTSHQALGGHRTSH 191
                      89*************99998887 PP
4zf-C2H211.40.00098209231123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg+ F     L  H+r+H
  LPERR11G20170.1 209 HECEVCGMGFEMGQALGGHMRRH 231
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.75E-95274No hitNo description
SMARTSM003550.195274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6995279IPR007087Zinc finger, C2H2
PfamPF139125.9E-95276IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SuperFamilySSF576676.75E-9102129No hitNo description
PfamPF139125.6E-12106130IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-4107129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471107129IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
PfamPF139121.0E-8168193IPR007087Zinc finger, C2H2
SMARTSM003550.13169191IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575169196IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-7169231No hitNo description
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
PfamPF139121.0E-9208233IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452209236IPR007087Zinc finger, C2H2
SMARTSM003550.2209231IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEVATNSTNN STRSPVKLML VLTLSPASKV IGKGGGGGGN CRRVQLDHGG EFQCRTCGRR  60
FATFQALGGH RTSHKRPRVR ADGLDLLLGA RPGKIAGAAA SSAVAVHRCD MCGKVFATGQ  120
ALGGHMRRHR PLMGTTTATM SGSSSTTSEE ERRRRGATAT ESKAAAAAFE CRTCGRRFTS  180
HQALGGHRTS HLRPTRIKGR PSLSRPVVHE CEVCGMGFEM GQALGGHMRR HRPSNVEMGL  240
KKIVVQEIRP SFTHQLLDLF I
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G20170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616529.11e-64zinc finger protein ZAT8
TrEMBLA0A0D9XVN60.0A0A0D9XVN6_9ORYZ; Uncharacterized protein
STRINGLPERR11G20170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.17e-21C2H2 family protein