PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR11G20420.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GRAS

Protein Properties

Length: 667aa MW: 74122.4 Da PI: 5.8922

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR11G20420.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	347.7	1.9e-106	288	660	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lLl+cA+av+++d + a++lL ++++++sp+gd++qRla++f+++L+arla+++se+y++l +++ts +++ l+a++l+ ++ + k+++ LPERR11G20420.1 288 HSLLLHCAQAVATDDRRSAHELLRQIKQHSSPSGDATQRLAHCFAQGLEARLAGTGSEVYRSLMSQRTS---VVDFLKAYRLYMAACCCKKVAF 378 689**********************************************************999999...****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + N++I++av+g +r+Hi+D+++++G+QWp Ll++L++R++gpp++RiTg++ p++g ++ ++etg+rLa +A+elgvpf+f+ ++a++ e LPERR11G20420.1 379 VFSNKTIYDAVAGRKRLHIVDYGLNYGFQWPGLLRELTARQGGPPEVRITGIDLPQPGfrPEHHINETGRRLAAYADELGVPFKFHGIAATKKE 472 ******************************************************99**************************999* PP GRAS 188 dleleeLrvkp.gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +++l++L+ + +Eal+V + + +++des++ +rdevL+ +++++P+v+++ + ++++ Fl+rf eal yy+a fd l+a+++r+s LPERR11G20420.1 473 TVRLRDLQSDDpDEALVVISLCHFRNIMDESLDDGIsPRDEVLSNIRKTRPDVFIHGIMNGAYGATYFLTRFREALFYYAAQFDLLDATVARDS 566 *****99988***************9988779**************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +er+ vEr ++g+++ nv+acega+r+er e +++W++r ++aG+k++pl+ +++ + +r + + + v+e++ +l+ Wk+r L+++S W LPERR11G20420.1 567 HERMLVERDIFGPAALNVIACEGADRVERPEMYKQWQARNQRAGLKQLPLDPEVVRLVLDKVRDKYHKDFVVDEDQRWLLHRWKGRVLYALSTW 660 *******************************************************9999999888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.04	261	641	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.4E-104	288	660	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MYDMMGSTPE ETVQLQWPPP EPVFADDHAA SSAFDDDMVL PYISRLLMED DVHDHFFYQY 60 PDHPALLHAQ QPFAQILAAA ASSSSSSGGG VSSSSSSSSN APVSRDLFDD EVAAKTTTTF 120 PTFSVDQAAM SSGDLFFDMD MFNMAFLKGK EEASKLLPTN TTTSSLLVLG SASEEVAVDA 180 NGGSVLGARN NSKKVNRGDD LMELGSSRAN KLMAEEEEEE GARQMFDEMM LHEQDICMKG 240 VKQQLSLSTA NDNKSKSKKG SSGSNNGAAG KKARGRRTVI HADAVDLHSL LLHCAQAVAT 300 DDRRSAHELL RQIKQHSSPS GDATQRLAHC FAQGLEARLA GTGSEVYRSL MSQRTSVVDF 360 LKAYRLYMAA CCCKKVAFVF SNKTIYDAVA GRKRLHIVDY GLNYGFQWPG LLRELTARQG 420 GPPEVRITGI DLPQPGFRPE HHINETGRRL AAYADELGVP FKFHGIAATK KETVRLRDLQ 480 SDDPDEALVV ISLCHFRNIM DESLDDGISP RDEVLSNIRK TRPDVFIHGI MNGAYGATYF 540 LTRFREALFY YAAQFDLLDA TVARDSHERM LVERDIFGPA ALNVIACEGA DRVERPEMYK 600 QWQARNQRAG LKQLPLDPEV VRLVLDKVRD KYHKDFVVDE DQRWLLHRWK GRVLYALSTW 660 VAADQED

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MYDMMGSTPE ETVQLQWPPP EPVFADDHAA SSAFDDDMVL PYISRLLMED DVHDHFFYQY  60
PDHPALLHAQ QPFAQILAAA ASSSSSSGGG VSSSSSSSSN APVSRDLFDD EVAAKTTTTF  120
PTFSVDQAAM SSGDLFFDMD MFNMAFLKGK EEASKLLPTN TTTSSLLVLG SASEEVAVDA  180
NGGSVLGARN NSKKVNRGDD LMELGSSRAN KLMAEEEEEE GARQMFDEMM LHEQDICMKG  240
VKQQLSLSTA NDNKSKSKKG SSGSNNGAAG KKARGRRTVI HADAVDLHSL LLHCAQAVAT  300
DDRRSAHELL RQIKQHSSPS GDATQRLAHC FAQGLEARLA GTGSEVYRSL MSQRTSVVDF  360
LKAYRLYMAA CCCKKVAFVF SNKTIYDAVA GRKRLHIVDY GLNYGFQWPG LLRELTARQG  420
GPPEVRITGI DLPQPGFRPE HHINETGRRL AAYADELGVP FKFHGIAATK KETVRLRDLQ  480
SDDPDEALVV ISLCHFRNIM DESLDDGISP RDEVLSNIRK TRPDVFIHGI MNGAYGATYF  540
LTRFREALFY YAAQFDLLDA TVARDSHERM LVERDIFGPA ALNVIACEGA DRVERPEMYK  600
QWQARNQRAG LKQLPLDPEV VRLVLDKVRD KYHKDFVVDE DQRWLLHRWK GRVLYALSTW  660
VAADQED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-40	293	616	24	333	Protein SCARECROW
5b3h_D	6e-40	293	616	24	333	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR11G20420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015697752.1	0.0	PREDICTED: scarecrow-like protein 9
TrEMBL	A0A0D9XVR3	0.0	A0A0D9XVR3_9ORYZ; Uncharacterized protein
STRING	OBART11G23680.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-141	GRAS family protein