PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G01060.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 224aa    MW: 25387.1 Da    PI: 8.8677
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G01060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.31.3e-2242103259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  LPERR12G01060.1  42 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTKDPPMFSVTYFNHHTCN 103
                      8***************************99999*******875268**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-2429103IPR003657WRKY domain
SuperFamilySSF1182909.42E-2333104IPR003657WRKY domain
PROSITE profilePS5081116.01936105IPR003657WRKY domain
SMARTSM007742.2E-3341104IPR003657WRKY domain
PfamPF031062.3E-2542102IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MALDSVSSYP SDLGSSKSTR TPQQRVRKEE RTWTTDTYAP YDDGHQWRKY GEKKLSNSNF  60
PRFYYRCTYK NDMKCPATKQ VQQKDTKDPP MFSVTYFNHH TCNSSPKIVG TTPDTVAYSS  120
SRKAMSICFN SHGTTSEQPM FLSSSASLLS PSIQSYSSNQ QPDMNTYARQ FQWADTSSST  180
SNLPVKMEVD DYAEARASPN TTGALSRTLL PIGQSRCIEY FHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-1642102968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G01060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8320180.0CT832018.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616443.11e-137probable WRKY transcription factor 70 isoform X2
TrEMBLA0A0D9XWA01e-167A0A0D9XWA0_9ORYZ; Uncharacterized protein
STRINGLPERR12G01060.11e-167(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-23WRKY DNA-binding protein 55