PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G01080.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 319aa    MW: 35692.5 Da    PI: 5.7129
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G01080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.91.8e-17146214358
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS..........STTEEEEEEES--SS CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae..........dpkvveitYegeHnh 58 
                      Dg++WrKYGqK+++++++prsYYrCt++   +C+++k v++ +e           p + +++Y g+H++
  LPERR12G01080.1 146 DGHQWRKYGQKHINNAKHPRSYYRCTYRqeeKCKATKTVQQREElhyansnngdHPIMYTVVYYGQHTC 214
                      9**************************99999*******986532222222221355778888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-21139215IPR003657WRKY domain
SuperFamilySSF1182909.02E-19140214IPR003657WRKY domain
SMARTSM007749.1E-30144216IPR003657WRKY domain
PfamPF031062.3E-22146214IPR003657WRKY domain
PROSITE profilePS5081114.309146186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKNKRSLVAD QSRVSSVNFR AALSEIAREQ SLVTQLRAIV LPALQSDERC DIAAHMLEGI  60
LDCSRKAISQ LQLQLQLQLS SDSPHNDDDD HVDDERRVRK IVSSSDDDGC SSKAADENQN  120
AKPIRQHKRR RFGDSVSLET PVPHYDGHQW RKYGQKHINN AKHPRSYYRC TYRQEEKCKA  180
TKTVQQREEL HYANSNNGDH PIMYTVVYYG QHTCCKVGPA SADDHAVVEA SQISNESHCQ  240
SPSSSSSDLQ PAQAGDSSQG SNITVTCSTS VVVEDCNKLL DMLPAADELT TDVLLFDMTA  300
YAPLDLDINW EMDTNALWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-131462141068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G01080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620021.11e-174probable WRKY transcription factor 70
TrEMBLA0A0D9XWA20.0A0A0D9XWA2_9ORYZ; Uncharacterized protein
STRINGLPERR12G01080.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-20WRKY DNA-binding protein 70