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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR12G01340.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
GRAS |
| Protein Properties |
Length: 321aa MW: 34891.8 Da PI: 6.7962 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR12G01340.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 351.3 | 1.5e-107 | 1 | 314 | 49 | 374 |
GRAS 49 Laarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
++arl++s+ +ly+ +p s+ + ++ + +++aa+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp+
LPERR12G01340.1 1 MSARLVSSCLGLYAPVPNSSPAATRlHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPR 94
5799************6655555554899999************************************************************** PP
GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
+++Tg+g+ s e+le+tg+rL++fA++lg+pfef + va++ +l++e+L v ++Ea+aV++ h+l+d ++s ++ +L+l+++l
LPERR12G01340.1 95 VKLTGLGA----SMEALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----TLWLIQRLA 177
********....***************************.7************************99..999999999999....********* PP
GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a g +r+ + + +++Wre+l ++GF+ +l
LPERR12G01340.1 178 PKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFGVSSL 269
*************.899****************************************************999987.****************** PP
GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+aa+qa lll +++sdgy++ ee+g+l lgWkd L+++SaWr
LPERR12G01340.1 270 AGSAAAQAALLLGMFPSDGYTLIEENGALKLGWKDLCLLTASAWR 314
********************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008356 | Biological Process | asymmetric cell division |
| GO:0009630 | Biological Process | gravitropism |
| GO:0009956 | Biological Process | radial pattern formation |
| GO:0048366 | Biological Process | leaf development |
| GO:0051457 | Biological Process | maintenance of protein location in nucleus |
| GO:0090610 | Biological Process | bundle sheath cell fate specification |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MSARLVSSCL GLYAPVPNSS PAATRLHGRV AAAFQVFNGI SPFVKFSHFT ANQAIQEAFE 60
REERVHIIDL DIMQGLQWPG LFHILASRPG GPPRVKLTGL GASMEALEAT GKRLSDFADT 120
LGLPFEFCPV ADKAGNLDPE KLGVTRREAV AVHWLRHSLY DVTGSDSNTL WLIQRLAPKV 180
VTMVEQDLSH SGSFLARFVE AIHYYSALFD SLDASYSEDS PERHVVEQQL LSREIRNVLA 240
VGGPARTGDV KFGSWREKLA QSGFGVSSLA GSAAAQAALL LGMFPSDGYT LIEENGALKL 300
GWKDLCLLTA SAWRPIQASV R
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK073467 | 0.0 | AK073467.1 Oryza sativa Japonica Group cDNA clone:J033044H21, full insert sequence. |
| GenBank | AK243131 | 0.0 | AK243131.1 Oryza sativa Japonica Group cDNA, clone: J100030A12, full insert sequence. |
