PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G02200.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 127aa    MW: 14655.4 Da    PI: 4.6136
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G02200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM354.3e-111310729128
              NAM  29 eleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek 118
                      ++e+ i+++d+y  eP+dL      v+  ++ + +fF++ ++++    +++r++ +g+W    +  ev++ +g +vg  +++ f     ++g  
  LPERR12G02200.1  13 DTENLIHHADLYGGEPNDLAGmfaPVERcDNGDRFFFTSCKQHN----ESERKAGDGTWVRLSN-MEVKNDEGVKVGETQSFRFK----KDGMY 97 
                      45567**************8434533332344779999987754....6788899*****9876.7888889************7....78999 PP

              NAM 119 tdWvmheyrl 128
                      t+W+m+e + 
  LPERR12G02200.1  98 TEWLMEEHHC 107
                      *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.6091127IPR003441NAC domain
SuperFamilySSF1019419.29E-1416125IPR003441NAC domain
PfamPF023656.9E-628106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MSEFVFDRVP PKDTENLIHH ADLYGGEPND LAGMFAPVER CDNGDRFFFT SCKQHNESER  60
KAGDGTWVRL SNMEVKNDEG VKVGETQSFR FKKDGMYTEW LMEEHHCAVQ QAVASEEEPV  120
ICRMYML
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G02200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616101.13e-56uncharacterized protein LOC107278013
RefseqXP_015619129.14e-56NAC domain-containing protein 41
TrEMBLA0A0D9XWP86e-92A0A0D9XWP8_9ORYZ; Uncharacterized protein
STRINGLPERR12G02200.11e-92(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799