PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G02390.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 171aa    MW: 19052.5 Da    PI: 9.7161
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G02390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS66.65.1e-2176171220311
             GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.......eerikvErellgreivnvvacegaer 305
                       + +  ++L++v+slsPk+vvv+eq+adhn+ sF     ea++yy a+fdsl +a ++++s       +e + vEr+++g+e + v+  ega+r
  LPERR12G02390.1  76 APAPLARFLSVVRSLSPKIVVVAEQDADHNGVSF----REAIHYYGAVFDSLdAAAVAAAShshvwaaDELAQVERVVVGEEMKGVLLREGARR 165
                      4445678************************987....68************666666665667888788999********************* PP

             GRAS 306 rerhet 311
                      rerhe+
  LPERR12G02390.1 166 RERHER 171
                      ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.9241171IPR005202Transcription factor GRAS
PfamPF035141.8E-1876171IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGQALLECAA HVDWAHGEGH TLPRARHGPR HRHRRRATEA NRLQTQGRLF PFPKPWHALA  60
FVSPPPSTTA PHYHEAPAPL ARFLSVVRSL SPKIVVVAEQ DADHNGVSFR EAIHYYGAVF  120
DSLDAAAVAA ASHSHVWAAD ELAQVERVVV GEEMKGVLLR EGARRRERHE R
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G02390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616103.13e-39scarecrow-like protein 3
TrEMBLA0A0D9XWS11e-119A0A0D9XWS1_9ORYZ; Uncharacterized protein
STRINGLPERR12G02390.11e-120(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-07RGA-like 1