PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G02630.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 68aa    MW: 7522.64 Da    PI: 10.3116
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G02630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.41.6e-073263234
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevi 34
                     +pG++  Ptdeelv+ yL+ k+eg++ +l ++i
  LPERR12G02630.1 32 APGYHLAPTDEELVDIYLRSKIEGRRPPL-HFI 63
                     69**********************99776.444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-82364IPR003441NAC domain
PROSITE profilePS5100510.4683168IPR003441NAC domain
PfamPF023653.0E-53364IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MEIGGGDGPA ARPPPATGRS RKHKMVPQLT FAPGYHLAPT DEELVDIYLR SKIEGRRPPL  60
HFINAFRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G02630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XWU83e-42A0A0D9XWU8_9ORYZ; Uncharacterized protein
STRINGLPERR12G02630.16e-43(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137