PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR12G03290.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Protein Properties

Length: 287aa MW: 32352 Da PI: 6.8317

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G03290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	96.6	1.6e-30	38	140	1	97
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..s 88 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F+++++ LPERR12G03290.1 38 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGDVVHFERVRSlgA 131 99*************************9666668889**********************************************8876633 PP EE..EEEEE CS B3 89 efelvvkvf 97 + +l+++ + LPERR12G03290.1 132 GDRLFIGCR 140 344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.8E-41	33	147	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.7E-29	35	129	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.46E-28	37	128	No hit	No description
PROSITE profile	PS50863	13.676	38	142	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.1E-28	38	141	IPR003340	B3 DNA binding domain
SMART	SM01019	9.9E-23	38	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010073	Biological Process	meristem maintenance
GO:0010358	Biological Process	leaf shaping
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MAMHPLAHGH PQAWPWGVAM YTNLHHYHHH HYEREHLFEK PLTPSDVGKL NRLVIPKQHA 60 ERYFPLSGDS GEKGLLLSFE DESGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKHLDAGDV 120 VHFERVRSLG AGDRLFIGCR RRGETAPAAA PPPPAVRVPP PTTLNGGEQQ PWSPMCYSTS 180 GSSYDPTSPA NSYAYYRSVD QDHSDILHAG ESQRDADTKS SSEASAPPPS RRLRLFGVNL 240 DCGPEPEEDQ ATAMYGYMHH QSPYAAVSAV PNYWSGHLVH EMMVEEI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	6e-52	33	142	3	113	B3 domain-containing transcription factor NGA1
5os9_B	6e-52	33	142	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G03290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL928758	0.0	AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618154.1	1e-165	B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	1e-128	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A0D9XX25	0.0	A0A0D9XX25_9ORYZ; Uncharacterized protein
STRING	LPERR12G03290.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	2e-55	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]