PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G03370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family E2F/DP
Protein Properties Length: 442aa    MW: 48190.2 Da    PI: 4.3809
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G03370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.32e-26129194171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kfl+ll+ ++ giv+ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  LPERR12G03370.1 129 RYDSSLGLLTKKFLNLLKGAPGGIVDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNNIRWKG 194
                      6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.5E-28127195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.6E-35129194IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-16129192IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.7E-23131194IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.85E-49205311No hitNo description
SuperFamilySSF1440748.11E-34206311No hitNo description
PfamPF164214.0E-34210309IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAAAGAGSSE VAARVLLQRY QPFAPPPGEY HQFAAGGGAA ADMTEAVLIR TPLKRKHDRE  60
ENEAAESNDW MMSPGYANAA GSPVPTPLSG KGSKAFAKSK STKGQKSCPQ TPLCATSPGN  120
PVTPVGGCRY DSSLGLLTKK FLNLLKGAPG GIVDLNNAAE TLEVQKRRIY DITNVLEGIG  180
LIEKKLKNNI RWKGIDDSRP GEVSDDMSIL QADIEALSLQ EQSLDQKISE MRDKLRGLTE  240
DENNQKWLYV TEDDIKSLPC FQNQTLIAIK APHGTTLEVP DPDEVNDYPQ RRYRIVLRST  300
MGPIDVYLVS QFEEMSGMET PPRTVQTVSM ENPTTPLAAE SNKAAEAEPN IQDGLIMPCD  360
APSSSQDMGG MMKIVPSELD TDADYWLLSD TGVSITDMWK TAPEVEWEGI EKFNAEDFLE  420
VSTPRQQDKP SSDIMDGDSC IS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-22118195274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G03370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0592330.0AK059233.1 Oryza sativa Japonica Group cDNA clone:001-024-E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620749.10.0transcription factor E2FA
SwissprotQ9FNY01e-123E2FA_ARATH; Transcription factor E2FA
TrEMBLA0A0D9XX330.0A0A0D9XX33_9ORYZ; Uncharacterized protein
STRINGLPERR12G03370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-111E2F transcription factor 3
Publications ? help Back to Top
  1. Magyar Z, et al.
    Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes.
    EMBO J., 2012. 31(6): p. 1480-93
    [PMID:22307083]