PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G05830.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Nin-like
Protein Properties Length: 366aa    MW: 38876.9 Da    PI: 6.5613
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G05830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK75.37.1e-24281331252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      + +++l d++ yF+lpi++AA++L+vc+T+LK iCR++G++RWP+Rk++s+
  LPERR12G05830.1 281 TRKLQLGDIAPYFELPIAKAASKLDVCATALKGICRKHGVSRWPYRKVRSI 331
                      67899*******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.188271353IPR003035RWP-RK domain
PfamPF020421.2E-20284331IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MADGGGGGVV NHPIPLMDDD FDDILRLLDS PVDLGLGYHD AAAAPAPVMI VEHEGGGGQL  60
PTAAAVCSSS GDDDFLVGSI DNVVVDGGGG GASTSSVVTT SAALEPAPAP PQEDALGCSG  120
CHVLREVVHS NGLEMTKLCV HGDGGIGVFY HAILDVYRVN AEVPAPALVH HSIVEGRGNE  180
WVNQYLTDYI LRRASGGFAV MHDLVSSFHK TLCTTMERSS HVNDAHKRAS AAAAAAAKNN  240
GNGDDRQPVV HTDVVQQPGL PKLPVIKRNS LSNSLPRREK TRKLQLGDIA PYFELPIAKA  300
ASKLDVCATA LKGICRKHGV SRWPYRKVRS IDRQIATLRR SDNGDATREE IERLSALRKR  360
VVEGFE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G05830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664445.14e-88PREDICTED: uncharacterized protein LOC102713973
TrEMBLA0A0D9XXY70.0A0A0D9XXY7_9ORYZ; Uncharacterized protein
STRINGLPERR12G05830.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.11e-11RWP-RK domain-containing protein