PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G07370.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 508aa    MW: 55117.5 Da    PI: 7.3153
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G07370.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.4e-09109134126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C ++ ++G C++G +CkF+H+
  LPERR12G07370.2 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134
                      5789*********************8 PP
2zf-CCCH261.6e-08219241325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +e+C++++  G Ck+G +Ck+ H
  LPERR12G07370.2 219 QEECKYYSTPGGCKFGKSCKYLH 241
                      589******************** PP
3zf-CCCH34.63.1e-11266290226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Cky  +CkF+H+
  LPERR12G07370.2 266 GEKECPYYMRTGSCKYATNCKFHHP 290
                      7899********************9 PP
4zf-CCCH19.91.3e-06412438127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f ++G+Ck+  +Ck++H++
  LPERR12G07370.2 412 PGQPECQHFVKSGFCKFRMKCKYHHPR 438
                      5789*********************96 PP
5zf-CCCH25.13.1e-08458483227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ r+G CkyG+ C ++H++
  LPERR12G07370.2 458 DQPVCTYYGRYGVCKYGPACAYNHPF 483
                      6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258108136IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6110134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-5113136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075216244IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022217243IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-6219241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5220243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4222242IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5264291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793264292IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-8266290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6267291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4270289IPR000571Zinc finger, CCCH-type
SMARTSM003560.028411438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676411439IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5415440IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5454482IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042456483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732456484IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-6458483IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MADADARAPL PESATSPIGS VSPSSPRSPS AAAAAAAAAE DVVEEQLAGL AIADQEEGEE  60
EEELGLPKPT GWEDGGGEEK LLVRPGGEVA AVVEGGAAAD SRPRFPRRPG EPDCTYYVKF  120
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGSSNSSSNK ASSPDDEQGF ADKGSTSNSE  180
NFKKTSYEII DVKKGRVEPK ELKVAKEKRK DFFSEGGSQE ECKYYSTPGG CKFGKSCKYL  240
HRDGKDGKSE AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK YATNCKFHHP DPSNVASKDP  300
QLERENGDTP QQDVQGSSSQ PNAPIWPDQK TVNEHHVPFL APSPSYSAGM LPPQGMYHPP  360
EWNGYHQVPL NPYYPPAVPF QHFPAPINHP MYKAPEIPGH QQVPSEEYPE RPGQPECQHF  420
VKSGFCKFRM KCKYHHPRSQ VPPSAGALSP LGLPIKPDQP VCTYYGRYGV CKYGPACAYN  480
HPFNFGPVPA AGPPLLPAQY PSPGNYTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G07370.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114980.0AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence.
GenBankAK1217740.0AK121774.1 Oryza sativa Japonica Group cDNA clone:J033092M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620303.10.0zinc finger CCCH domain-containing protein 65 isoform X4
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0D9XYG60.0A0A0D9XYG6_9ORYZ; Uncharacterized protein
STRINGLPERR12G07370.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.22e-70C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]