PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G07400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 1252aa    MW: 139814 Da    PI: 7.8042
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G07400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003211331156122
                       EEET..TTTEEESSHHHHHHHHHH CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                       ++C    C++sFs++ +L  H r 
  LPERR12G07400.1 1133 FPCDieGCDMSFSTQQDLLLHKRD 1156
                       789999***************985 PP
2zf-C2H212.30.0005312161242123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C+   Cg++F+  s++ rH r+  H
  LPERR12G07400.1 1216 YECKepGCGQTFRFVSDFSRHKRKtgH 1242
                       89********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5118434.06164233IPR003347JmjC domain
SMARTSM005582.7E-4464233IPR003347JmjC domain
SuperFamilySSF511971.02E-2280230No hitNo description
PfamPF023734.6E-3597216IPR003347JmjC domain
SMARTSM003559.711331155IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90711561185IPR007087Zinc finger, C2H2
SMARTSM003551511561180IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011581180IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-1411671222No hitNo description
Gene3DG3DSA:3.30.160.601.6E-1011831210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.32311861215IPR007087Zinc finger, C2H2
SMARTSM003550.001811861210IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011881210IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-1012111239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.92612161247IPR007087Zinc finger, C2H2
SMARTSM003550.1512161242IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012181242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1252 aa     Download sequence    Send to blast
MAAEFEPPRH ASPPKNATSL QIEALFWAAC ASKPFSVEYG NDMPGSGFAS PEELGQKLGA  60
NANDVGETEW NMRVAPRARG SLLRAMGRDV AGVTSPMLYV AMLYSWFAWH VEDHELHSLN  120
FLHFGKPKTW YGVPRDAMLA FEETVRVHGY ADDLNAIMAF QTLNEKTTVL SPEVLLSAGV  180
PCCRLVQKAG EFVITFPGAY HSGFSHGFNC GEASNIATPH WLQVAKEAAI RRASTNCGPM  240
VSHYQLLYEL ALSLRPREPN NFHFVRSSRL RDKNKNEGDI MVKENFVGSV TENNNLLSVL  300
LDKNSCIIVP KIAFPISSFR MALESEVTAK QKFTAGPSSI SQQGAENMAV DHVSVDKASE  360
IQDMSGSIYA CDTSFVACSS RKLYETKYGK KDAASLCLST SEIQSRGIDN ARLHPAGGIL  420
DQGRLPCVQC GILSFACVAI IQPREAAVQF IMSKECISSS ANHGEIGASD DTSNWINRHH  480
EIGPPPGIAS ETEDNVKHTT SLAHVSDQCE QLYGNKTDGG TSALGLLASA YDSSDSDEET  540
AEDVSKHREK NDSVNENTNT RILETSSSCS SMVQCQKKNS HLHGKCEARD TSLMEPVNHN  600
GRTISQCSRD TDFGHFIELG KSGTHCSGYL DLVDDLTTSV LKPSSDTYVS ADKASMDPDV  660
LTMLKYNKES CRMHVFCLEH ALETWTQLQK IGGANIMLLC HPEYPRAESA AKVIAEELGV  720
KHDWKDVNFK EATEEDIRKI QLALQDEDAE PTGSDWAVKM GINIYYSAKQ SKSPLYSKQI  780
PYNSIIYKAF GQENPDSLTD YGGQKSGSAK KKVAGWWCGK VWMSNQVHPL LARQREEQNG  840
STGYSKITFA AISHAKVQDE PSTRCNTLIN RSLSKRTSRR KGMESAEKSK EKKKKTTASN  900
EASIHYNGPG INSEVISDQL ENSDDHDKYD KRDEIEEETN PQIYQQHKLQ NVTRKSVSRK  960
RKDEKRKDGF HELYGKDNDV DYLVNNTNMG SGDDATLGNS DNTQQQSLDP VKVKSGGKLQ  1020
GNKRKSSKCK SSDDLLNEDN KLQKMNKKSS SKKQKNDKIN RQFQGQNEDD HLDHLLDVEI  1080
RDVMPENEDK ITEDKIEDAE VKSRGKLQSG KSKTSKRQAR DSLRTGNNKL AKFPCDIEGC  1140
DMSFSTQQDL LLHKRDICPV KGCKKKFFCH KYLLQHRKVH IDERPLKCMW KGCKKAFKWP  1200
WARTEHMRVH TGVRPYECKE PGCGQTFRFV SDFSRHKRKT GHSSDKRRKN ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-561130124920139Lysine-specific demethylase REF6
6a58_A2e-561130124920139Lysine-specific demethylase REF6
6a59_A2e-561130124920139Lysine-specific demethylase REF6
6ip0_A2e-5322254125353Transcription factor jumonji (Jmj) family protein
6ip4_A2e-5322254125353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1878894RRKGMESAEKSKEKKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G07400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652510.0AK065251.1 Oryza sativa Japonica Group cDNA clone:J013002J08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620626.10.0lysine-specific demethylase REF6
TrEMBLA0A0D9XYG90.0A0A0D9XYG9_9ORYZ; Uncharacterized protein
STRINGLPERR12G07400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-126relative of early flowering 6