PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G08470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 406aa    MW: 45003.3 Da    PI: 5.9849
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G08470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.21.9e-20251493128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       GfrF+P+ e+++++yL + ++g++  ++   ++++ +y + eP+dL +      +++++e yfF++ ++ +    r +r++  g+W  +   k
  LPERR12G08470.1  25 IGFRFNPSPEDVITFYLPNLIAGQNpPDAVGLFHNAAVYGAqEPKDLAAqfapVSRSSNEERYFFTTCHRIK---GRVSRVAGGGTWVLQSA-K 114
                      7**********************99444556699999997669****843665445577799******9975...59**********98865.8 PP

              NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +v++ kg+++g  k++ f   r+ k ++t+W+m+ey+l
  LPERR12G08470.1 115 NVTK-KGRKIGEVKSFRFQL-RKGK-TNTNWLMEEYHL 149
                      8888.8999*********84.4444.59*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-2320169IPR003441NAC domain
PROSITE profilePS5100525.23223169IPR003441NAC domain
PfamPF023655.6E-1426149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MALLAPDPTL SREVDIPQLD VFLDIGFRFN PSPEDVITFY LPNLIAGQNP PDAVGLFHNA  60
AVYGAQEPKD LAAQFAPVSR SSNEERYFFT TCHRIKGRVS RVAGGGTWVL QSAKNVTKKG  120
RKIGEVKSFR FQLRKGKTNT NWLMEEYHLA CYPETGDFVE PVVCRIYVSP RVGTNSAAHQ  180
ESAAALMPLP PQPQPPIAPP RQVPVMIRQQ LQLPAPVKRL HIVTPVITES PPCAKRMRGA  240
ILPTVASVPP PRPSQRFMAI APPRPACAPQ LPPQQPASLL TGEHHHTAPQ PSVTATLDQG  300
LVPAEDCNEP DKNDGVGMEE LMRIIEEDLN VYMKSYRPVE EEDGKNGKPK EVLVLVPDND  360
EHDKLAKLLE DVLKEAMEEK SINDGKNELQ KADEHDVPNN DEERHQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G08470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619211.23e-77uncharacterized protein LOC107275392
TrEMBLA0A0D9XYU10.0A0A0D9XYU1_9ORYZ; Uncharacterized protein
STRINGLPERR12G08470.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.24e-11NAC domain containing protein 52