PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G09780.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 144aa    MW: 15971.2 Da    PI: 10.3653
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G09780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.82.1e-40151411121
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrF+Ptdeelvv+yL++++ + +l+++  i++v+++ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v 
  LPERR12G09780.1  15 LPPGFRFRPTDEELVVHYLRRRALDAPLPAAVDIPDVRLLAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGDGYWKATGKEKPVA 106
                      79***************************9666**************43..3447899***********************************9 PP

              NAM  94 sk.......kgelvglkktLvfykgrapkgektdW 121
                      ++       ++ +vg+k++Lvfy+g+ p g+ktdW
  LPERR12G09780.1 107 VAvqspaasQSVVVGMKRSLVFYRGKPPAGKKTDW 141
                      9888888777777********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-408141IPR003441NAC domain
PROSITE profilePS5100539.6915144IPR003441NAC domain
PfamPF023652.6E-2116141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
METTTTARRA AATALPPGFR FRPTDEELVV HYLRRRALDA PLPAAVDIPD VRLLAHDPSD  60
LLPPGWSEQE RYFFTCKEAK YVKGRRANRA TGDGYWKATG KEKPVAVAVQ SPAASQSVVV  120
GMKRSLVFYR GKPPAGKKTD WETS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-311114111133Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G09780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618303.13e-77NAC domain-containing protein 83
SwissprotO227982e-43NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A0D9XZ891e-100A0A0D9XZ89_9ORYZ; Uncharacterized protein
STRINGLPERR12G09780.11e-101(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-30NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]