PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G10620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 230aa    MW: 24405.8 Da    PI: 8.8954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G10620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.6e-06107149854
                      HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      + r RR++i ++ +eL +l+P  a     + +s a++L  A +Y+k L
  LPERR12G10620.1 107 AARERRRQISEKTAELSRLIPGgA-----RMNSTADMLYFARRYVKFL 149
                      6699******************55.....66***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.49399149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-5105155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-6105153No hitNo description
Gene3DG3DSA:4.10.280.109.1E-7106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-9106160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSPTSAHQVF DRRRLLAVAA VNAGMGHADS AADALRPFTD EPAAAIDDLL APLPSGCRGA  60
GAAGERPAKR PRASAACDQT TPPPPRHWQV GPDLAAAAKG NKGGSAAARE RRRQISEKTA  120
ELSRLIPGGA RMNSTADMLY FARRYVKFLK AQVDILSLLP SSGEVAMPSM MTAEEQETMM  180
ALLASGRVQE RLAGEGKCIV PTSFVRAVAG DGDDVLNREL ARFINSLQEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G10620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650631.11e-34uncharacterized protein LOC103631513
TrEMBLA0A0D9XZI71e-165A0A0D9XZI7_9ORYZ; Uncharacterized protein
STRINGLPERR12G10620.11e-166(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-17bHLH family protein