PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G10770.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29302.5 Da    PI: 10.2377
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G10770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.81.9e-251059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rien+  rqvtfskRr g+lKKA+E+ vLC ++va+++fss+gkl+ y+s
  LPERR12G10770.1 10 RIENEVSRQVTFSKRRSGLLKKAHEIAVLCHVDVALVVFSSKGKLFHYAS 59
                     8**********************************************986 PP
2K-box775e-26971742299
            K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       kL+++ie+L+++qR+l+G++L++L+l+e+qqLe+q+++sl++iRs+Kn+lll++i el+kkek l e+n+ L+k + 
  LPERR12G10770.1  97 IKLRARIETLKKSQRNLMGQELDTLTLREIQQLENQIDTSLRNIRSRKNHLLLKSIGELRKKEKLLMEKNTILEKGIT 174
                      59***********************************************************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.787161IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-35160IPR002100Transcription factor, MADS-box
CDDcd002659.10E-36274No hitNo description
SuperFamilySSF554551.31E-28276IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.43789179IPR002487Transcription factor, K-box
PfamPF014868.5E-2198171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRGKVQVRR IENEVSRQVT FSKRRSGLLK KAHEIAVLCH VDVALVVFSS KGKLFHYASQ  60
HTSMERILEQ YNRHILYQGN GTERCHELEG SMSYGDIKLR ARIETLKKSQ RNLMGQELDT  120
LTLREIQQLE NQIDTSLRNI RSRKNHLLLK SIGELRKKEK LLMEKNTILE KGITELETSL  180
HRRFRASRTE VNAPTSNNAA DAFVPSLNIC CGDSEVPGTM TAPLGWTNSD NSLPWWMLGP  240
SSNGQNISSI RSRKMED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21174172MEF2C
5f28_B5e-21174172MEF2C
5f28_C5e-21174172MEF2C
5f28_D5e-21174172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G10770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698582.11e-123PREDICTED: MADS-box transcription factor 20-like
SwissprotQ2QQA31e-121MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A0D9XZK60.0A0A0D9XZK6_9ORYZ; Uncharacterized protein
STRINGLPERR12G10770.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.17e-58AGAMOUS-like 8