PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G11190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 213aa    MW: 24154.2 Da    PI: 4.509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G11190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-111381771054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++RR+riN+++  L+el+P+      +K++ +++Le+A++YIk L
  LPERR12G11190.1 138 QKRRQRINERLKILQELIPNG-----TKVDISTMLEEAIQYIKFL 177
                      89*****************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.814128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-13136192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-9138177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-11138182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEVECASYCS SLEAICEDSE MIAHLQSLFW SSSDANPFLG SSNNSFSLSS SSSFSLISNG  60
SYDTMGTELV NNSTNICFEY RDDSLFSLEE TSSIGNKRKN QMDTGHEQMM NHSKEVCTAI  120
SDLFNLVSDL IMQCLQKQKR RQRINERLKI LQELIPNGTK VDISTMLEEA IQYIKFLHLQ  180
IKLLSSDEMW MYAPLAFDGV NNRLHQNNSL SLE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G11190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619477.23e-81transcription factor SPATULA isoform X1
TrEMBLA0A0D9XZQ71e-155A0A0D9XZQ7_9ORYZ; Uncharacterized protein
STRINGLPERR12G11190.11e-155(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.32e-34bHLH family protein