PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G11960.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 189aa    MW: 19682.6 Da    PI: 5.3435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G11960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.4e-0544841054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     rr R  + + ++eL +llP +      + +Ka+++e A e++k L
  LPERR12G11960.1 44 RRPRPTMGELYSELASLLPGL----PYRANKADMVEAAAEHVKVL 84
                     7778888999**********6....279*************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.4453484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-74195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-54387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAFMAGGGYR LELSLACADP TPTPAPEAAM DDLRAAPLQR RWDRRPRPTM GELYSELASL  60
LPGLPYRANK ADMVEAAAEH VKVLEDTVAV LEAYRAVQAG GVAGAAGEVS VSYRDTVCFA  120
ARLPPPAATR RGALTRVLEA FDRRGVEVYA ATVARAGAGG DGAAMVTVTA AAAAPEVVKM  180
IKADIAGIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G11960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620183.16e-46uncharacterized protein LOC107278004
TrEMBLA0A0D9XZZ71e-128A0A0D9XZZ7_9ORYZ; Uncharacterized protein
STRINGLPERR12G11960.11e-129(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931