PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR12G12950.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 149aa MW: 16459.4 Da PI: 7.4226

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G12950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.8	1.4e-14	29	89	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 + +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+a N + + + + ++a++++e+ LPERR12G12950.1 29 DNRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARTADIAGQYARVEQEN 89 568*****************************************99999999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-11	22	74	No hit	No description
SMART	SM00338	2.4E-16	27	91	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.128	29	92	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.7E-11	30	89	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.31E-10	31	80	No hit	No description
CDD	cd14702	3.67E-15	32	83	No hit	No description
PROSITE pattern	PS00036	0	34	49	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006971	Biological Process	hypotonic response
GO:0009267	Biological Process	cellular response to starvation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000693	Biological Process	positive regulation of seed maturation
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MSTSSLSPAG SSDGGLSPSP SPSSPAAADN RREKRRLSNR ESARRSRLRK QQHLDELVQE 60 VARLQADNAR VAARTADIAG QYARVEQENT VLRARAAELG DRLRSVNEVL RVVEEFSGVA 120 MDIQEECPVD DPLLRPWQIP CPAAHMLQY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	49	RRSRLRK
2	43	50	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00419	DAP	Transfer from AT3G62420	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G12950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB185280	1e-154	AB185280.1 Oryza sativa Japonica Group OsOBF1 mRNA for bZIP protein, complete cds.
GenBank	AL935072	1e-154	AL935072.4 Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	1e-154	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	CP012620	1e-154	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808697.1	5e-77	ocs element-binding factor 1
Swissprot	P24068	5e-75	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	A0A0D9Y0C8	1e-102	A0A0D9Y0C8_9ORYZ; Uncharacterized protein
STRING	LPERR12G12950.1	1e-103	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	1e-35	basic region/leucine zipper motif 53

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]