PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14120.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 354aa    MW: 39497 Da    PI: 8.375
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.8e-067192223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C  C+k+Fs++ +Lk H r+H
  LPERR12G14120.1 71 QCRMCSKVFSTSKSLKDHTRLH 92
                     7*******************99 PP
2zf-C2H211.50.00092275297123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ CgksF +   L  H+r+H
  LPERR12G14120.1 275 HRCSTCGKSFWSGQALGGHMRRH 297
                      79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.4E-4735IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.44E-5834No hitNo description
SMARTSM003550.111032IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3251039IPR007087Zinc finger, C2H2
PfamPF139125.7E-81032IPR007087Zinc finger, C2H2
PROSITE patternPS0002801134IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0947097IPR007087Zinc finger, C2H2
SMARTSM003550.027092IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.67E-107192No hitNo description
Gene3DG3DSA:3.30.160.601.6E-571107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576671.67E-10270297No hitNo description
Gene3DG3DSA:3.30.160.602.9E-4272297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.596275302IPR007087Zinc finger, C2H2
SMARTSM003550.02275297IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-10275298IPR007087Zinc finger, C2H2
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAPRGRPRKY CCKQCNKSFR SGNALGGHMS FHLHIENQAK SMSSHTTVVD LHVPLMSLCD  60
DKRLLLSPKT QCRMCSKVFS TSKSLKDHTR LHGEMKMMTK PVEEAAGLIE ALDFAESMQN  120
VTVFSSVKRK RSFRSKRQTP ALSLEEIDAA DALLLLSERF HKTSAYEDCY LGDKEDSSSG  180
SIMLAEVNLN VPDHCLVRSV DSKEPINDNN SAYESRYGKS DKENCLVPIV PKEMDLNDFD  240
HEPVGDAEFR KPRTNNNSEE NKFGDLSAAV KDKSHRCSTC GKSFWSGQAL GGHMRRHYVR  300
KCNRRGGVAD SPDSVVMKER KLKLGLDPNL LDISLPALTD GDCISLAVKS EPKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619008.11e-176uncharacterized protein LOC4352630 isoform X1
TrEMBLA0A0D9Y0U10.0A0A0D9Y0U1_9ORYZ; Uncharacterized protein
STRINGLPERR12G14120.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.16e-09C2H2-like zinc finger protein