PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14340.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 377aa    MW: 39970.4 Da    PI: 4.7221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-183988255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +grWvAeI+d      ++ r++lg+f+tae+Aa+a+++a+  l+g
  LPERR12G14340.1 39 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEDAARAYDEAACLLRG 88
                     789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-293895No hitNo description
PROSITE profilePS5103219.4273996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-273995IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-193996IPR016177DNA-binding domain
PfamPF008477.2E-133988IPR001471AP2/ERF domain
SMARTSM003808.8E-3639102IPR001471AP2/ERF domain
PRINTSPR003679.6E-84051IPR001471AP2/ERF domain
PRINTSPR003679.6E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAPSPSPILL SPPSTDRKRK APDAADDHPP APAMRGRKRF VGVRQRPSGR WVAEIKDTIQ  60
KIRVWLGTFD TAEDAARAYD EAACLLRGSN TRTNFWPRPS PPPMSPVATP TATPALPSKV  120
TDLLLLRLKA RHNTNQQLAG AVAETAVEKT AVPTVAEEVF VRGRGHGEEE EEYGLGLFHV  180
DDFLSDECSN ENSSFSFSSS GSGGDCNSSS SQEIDEDEEL DFQFMDEHAA AAAPACSPFE  240
VVAAELGIAA AVDGEAAATA TAWMEYERKM SASLYALTGV SECLRIRAAA GGGGSAARES  300
QLSGLREACR KKRQRESSSS SPSPAKVAAQ QKQEESPHPP PMEIGGGGDG MSEAASGADG  360
DVLMWSSLDL APICHMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-133895462ATERF1
3gcc_A1e-133895462ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-79CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619512.21e-103ethylene-responsive transcription factor ERN1
TrEMBLA0A0D9Y0X20.0A0A0D9Y0X2_9ORYZ; Uncharacterized protein
STRINGLPERR12G14340.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-22related to AP2 11