PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14400.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 185aa    MW: 18414.8 Da    PI: 6.3505
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.9e-0592114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk F +   L  H r+H
  LPERR12G14400.1  92 HECNVCGKAFATGQALGGHKRRH 114
                      78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0073344IPR007087Zinc finger, C2H2
PfamPF139124.0E-1291116IPR007087Zinc finger, C2H2
SuperFamilySSF576672.72E-691116No hitNo description
Gene3DG3DSA:3.30.160.601.8E-592114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.69992114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAVETVLDVA VAVVSSPSPP ASSSDGGGAA GEGKALGGHK ASHRIKPSPL PATADEEEVE  60
IKPAITTPAT ITTTPTSSAS AGVAGGERAA AHECNVCGKA FATGQALGGH KRRHYDGTIG  120
SAAAPAPASK MAKASAVERR GFDLNLPALP EIAAAGEWCT AATAAEEDEV LSPLAFKKPR  180
LMIPA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808181.12e-41zinc finger protein 1-like
TrEMBLA0A0D9Y0Y01e-127A0A0D9Y0Y0_9ORYZ; Uncharacterized protein
STRINGLPERR12G14400.11e-127(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.17e-13zinc-finger protein 3