PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR12G14590.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 194aa MW: 20986.8 Da PI: 9.9311

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G14590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.8	6.2e-35	33	86	6	59
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG+lrnvP+Gg++rk+ LPERR12G14590.1 33 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRP 86 68*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-30	33	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.512	33	87	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-22	34	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEAPLHQSPF PQQQQTAPAM AMAMVAGGGG GREQCPRCAS RDTKFCYYNN YNTAQPRHFC 60 RACRRYWTLG GSLRNVPIGG STRKRPRPYH PHHRRAINKQ ANYTHNSVIA SSAPPQQEGG 120 SGISVWSALM LGGAPVLEGE QFGFGGGFGR QVMWQAGRVM DQGYSSPPAL WAQELAAVAA 180 PVEMAVTGGV PQLM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	87	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G14590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL954829	6e-71	AL954829.6 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	6e-71	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	CP012620	6e-71	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9Y106	1e-141	A0A0D9Y106_9ORYZ; Uncharacterized protein
STRING	LPERR12G14590.1	1e-142	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	8e-27	DOF zinc finger protein 1