PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14610.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 874aa    MW: 100567 Da    PI: 8.6866
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-141081831798
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++pk fa++++g       ++le ++g++++v++   k  ++ v+++GW+ F++a +L+ gDf+vF ++g  +f+++v +f+
  LPERR12G14610.1 108 TIPKMFAKNFQGH--LFGAVKLEVPDGKTYDVEI--AKEHNELVFRSGWEVFASAYELEHGDFLVFGYSG--NFHFKVWIFN 183
                      79*****888766..4458***************..*******************************988..5655888876 PP
2B340.64.7e-13340427997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                       + +sg lv++k++a ++ ++  ++kt+tl ++ g ++W + l  +   +  y +++GW +F ++n L+egD++vF+ +++ ++ +l+++ f
  LPERR12G14610.1 340 TSVASGSLVFSKDYAVRYLLD--QNKTITLCQSGGsKTWHISL--DIDTDNlYAISTGWLDFFRDNLLQEGDICVFEASKSkKGVTLTFHPF 427
                      4566788***********888..5568898887777*******..8888777*************************998867777777766 PP
3B344.23.5e-144975643499
                      SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  34 ktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      + ++l+  ++  +W+  ++ +++ +  +ltkGW +Fv++n+L++ D+++F+l+ + ++ +++v+++rk
  LPERR12G14610.1 497 QIMRLRLpKTKYKWKAAFQLNRNTNLRMLTKGWGKFVNDNKLDVHDICLFQLMTNkKKLTMTVHIIRK 564
                      4566666244579**99999999999***************************988*********998 PP
4B351.51.8e-167698611599
                      -EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
               B3  15 rlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                      ++ ++ ++a+++          +++k+++ tl  + ++++ We ++  + k gr++l +GW++Fv++n+L+  D+++F+l+++ ++ +++v+++
  LPERR12G14610.1 769 IMPFSSDYAKNYlphldqtirlQLPKRNN-TLLKKKKRNNAWETEY--QIKEGRHWLVQGWRKFVRDNKLEIDDICLFQLMKDeEQVTMMVHII 859
                      45555666666676666666666666554.555577888*******..99*******************************999********** PP

                      -S CS
               B3  98 rk 99 
                      rk
  LPERR12G14610.1 860 RK 861
                      98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.3E-694185IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-17108187IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-16108183No hitNo description
PfamPF023622.7E-12108183IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-16108187IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.194109185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-16325430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16326432IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-12331428No hitNo description
PROSITE profilePS5086311.617332430IPR003340B3 DNA binding domain
SMARTSM010198.0E-6334428IPR003340B3 DNA binding domain
PfamPF023621.4E-10340427IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-15447565IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-15448564IPR015300DNA-binding pseudobarrel domain
CDDcd100176.67E-11453563No hitNo description
SMARTSM010190.0013472565IPR003340B3 DNA binding domain
PfamPF023627.9E-13495564IPR003340B3 DNA binding domain
PROSITE profilePS5086310.546509565IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-18746861IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-18746862IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-13751860No hitNo description
PROSITE profilePS5086311.744753862IPR003340B3 DNA binding domain
SMARTSM010190.0011753862IPR003340B3 DNA binding domain
PfamPF023624.0E-15773862IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MQEARNNHRM RKSFTTCKEC ISYHYWNHMG EHKKSFLYVM IGDCVAVPAK FANSIRRQIS  60
EVVKLEVPNA LRYILYTFDD INFGEFETEE GISLMGNRTM HSWSLGGTIP KMFAKNFQGH  120
LFGAVKLEVP DGKTYDVEIA KEHNELVFRS GWEVFASAYE LEHGDFLVFG YSGNFHFKVW  180
IFNPSSCEKE LSCVVMNRSI SDDNHRQSPR SDRMHKSCTT CMDCITNHYW RHMDDRERYF  240
FKVILSVSDI KDALAIPKKF AANVRGKISE QVRLEVSDDA SSSEDSKVSM HSGGLQRSKK  300
FRYVLPMMYN MTSAQKAEVN ALEKKIQPQI PLYITAVEKT SVASGSLVFS KDYAVRYLLD  360
QNKTITLCQS GGSKTWHISL DIDTDNLYAI STGWLDFFRD NLLQEGDICV FEASKSKKGV  420
TLTFHPFKES HCPKPPEEES QRKKIQSIQP EIPVFLAVMR NSNCTGARSL VSWKLIPVDL  480
KFFSVTCASR YLPDEDQIMR LRLPKTKYKW KAAFQLNRNT NLRMLTKGWG KFVNDNKLDV  540
HDICLFQLMT NKKKLTMTVH IIRKEDSKSI CCCCVVSGST YIYGCFPAGS LKPSFGIVLL  600
ELIGKDIEEP ENSGDIKKKS TKSFYNSTTM CDMNSAQKAE VDALEKKIQP QIPYYITAMD  660
KASVAAGFMQ DMQINLDINT DGPYALSTGW LDFIQVNQLQ EEFAPASTKS DMNGVMKIGD  720
HSIFVSRSTR IADQQKRKIK EILQVIQYEN PVFAALMRRC SVGHSNMCIM PFSSDYAKNY  780
LPHLDQTIRL QLPKRNNTLL KKKKRNNAWE TEYQIKEGRH WLVQGWRKFV RDNKLEIDDI  840
CLFQLMKDEE QVTMMVHIIR KQQDISSYKI EQDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419931e-149AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ2QMT70.0Y1214_ORYSJ; B3 domain-containing protein Os12g0591400
TrEMBLA0A0D9Y1080.0A0A0D9Y108_9ORYZ; Uncharacterized protein
STRINGLPERR12G14610.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-15B3 family protein