PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14640.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 761aa    MW: 86994.4 Da    PI: 7.2913
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14640.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.65.9e-1568150190
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      ffk+l       s+ +++p k ae+ +g+ ++     l+ +sg++W v +  +k  ++ +l +GW++F+ka++L+e+D + F+ +g+s++
  LPERR12G14640.2  68 FFKIL---TEDCSHGISIPEKVAERLSGEITK--GFNLKAPSGKTWCVGI--EKVADELLLMSGWEDFAKAHELQENDLLFFSCKGNSNG 150
                      66666...33445669**********777555..59999***********..*******************************9988776 PP
2B343.65.4e-14300397199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      f++vl++++  ++++lv+p  fa+eh  +  +s +++l    + ++W vk+ + ++ ++++    W +F ++n+L++g +++F+l++  ++ ++
  LPERR12G14640.2 300 FVTVLKTANIRRKSLLVVPSGFADEHLDS--RSHEIVLIIpNKKEKWYVKYYHGNNTRGFICH-RWFKFIRENRLQDGYICIFELMKGaKRVTM 390
                      8899999999****************434..34456665527779******666666666555.9*******************9987799999 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+v+ k
  LPERR12G14640.2 391 TVHVIGK 397
                      9999865 PP
3B347.24e-154515321499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +r+++p kfa++++g+  ++    l+  sg +W v +  +k  ++++l +GW++F+ka++Lke+D + F+ +g+ + ++ v +f++
  LPERR12G14640.2 451 HRVSIPEKFAKNFNGQIIKG--FNLKAFSGGTWHVDV--EKVADEMFLVSGWEDFAKAHELKENDLLFFTCNGKGSCSFDVLIFDA 532
                      789*******9887775554..9999***********..*******************************8877555578888876 PP
4B3482.3e-15655752199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                      f++vl + +v+++++l++p  fa++h     +s +++l    + ++W  k+ + ++ +++  + GW +F   n+L+eg +++F+l++  ++ ++
  LPERR12G14640.2 655 FVTVLRTGHVHRKNILIVPAGFAANHLDR--KSHEIMLVRpNRKEKWYAKYYHANNTRGF-SGYGWIKFICKNKLQEGYVCIFELMKGaKRPTM 745
                      8899999****************999444..45578887736669******767777675.677********************9987799999 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+v++k
  LPERR12G14640.2 746 TVHVISK 752
                      9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-1761164IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.6665162IPR003340B3 DNA binding domain
CDDcd100172.41E-1367160No hitNo description
Gene3DG3DSA:2.40.330.104.7E-1867164IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-1268150IPR003340B3 DNA binding domain
SMARTSM010191.6E-868162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17293396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-17294396IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-14298395No hitNo description
PfamPF023623.0E-12300396IPR003340B3 DNA binding domain
SMARTSM010197.8E-9300398IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351300398IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-18435535IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.421438533IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18439535IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-15440531No hitNo description
SMARTSM010194.0E-6441533IPR003340B3 DNA binding domain
PfamPF023626.2E-12451532IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-19647750IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-19648750IPR015300DNA-binding pseudobarrel domain
CDDcd100177.37E-15653748No hitNo description
PROSITE profilePS5086312.21655753IPR003340B3 DNA binding domain
PfamPF023621.1E-13655752IPR003340B3 DNA binding domain
SMARTSM010192.5E-13655753IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MLSAKGKSSH SLFDPLTVLT ANFTRDQDYG NSILKKHAKV MAEKGCESCS RWQEHFYREH  60
MDVSRIRFFK ILTEDCSHGI SIPEKVAERL SGEITKGFNL KAPSGKTWCV GIEKVADELL  120
LMSGWEDFAK AHELQENDLL FFSCKGNSNG ICSFDVLIFD ASGCEKLSCF FISKKYSYIC  180
KHFNNTDSQN AEQYLSSDCE DTNTPPYLLG SPHKDSTSKK LSGKTKTNPS TSTGKEPEDP  240
NSSRCHVKHE MIEEEESDDD EHTDDEHDDY SYSRFASYLN SKERKQIFSL VSLQPGNPVF  300
VTVLKTANIR RKSLLVVPSG FADEHLDSRS HEIVLIIPNK KEKWYVKYYH GNNTRGFICH  360
RWFKFIRENR LQDGYICIFE LMKGAKRVTM TVHVIGKVDN RNVCGALYDA GEVMADKGCE  420
SCSKWQEHYY REHTDGSRIC FFRLMTGDFA HRVSIPEKFA KNFNGQIIKG FNLKAFSGGT  480
WHVDVEKVAD EMFLVSGWED FAKAHELKEN DLLFFTCNGK GSCSFDVLIF DASGCEKMPD  540
FFTSKKYNYM CKHFNNISGQ NVEHCLLSDS DDTSTPSYMA GSHKAATSKK VNGKTKISPS  600
KEPENVKQEM IEEEESDGDD EHVDYYYSRF ANYLTSEERE EIFSLTSLQP GNPVFVTVLR  660
TGHVHRKNIL IVPAGFAANH LDRKSHEIML VRPNRKEKWY AKYYHANNTR GFSGYGWIKF  720
ICKNKLQEGY VCIFELMKGA KRPTMTVHVI SKINNRFVLL G
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14640.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878095.10.0B3 domain-containing protein Os12g0592300 isoform X1
SwissprotQ2QMT20.0Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0D9Y1120.0A0A0D9Y112_9ORYZ; Uncharacterized protein
STRINGLPERR12G14640.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-25B3 family protein