PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14980.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 157aa    MW: 17084.2 Da    PI: 4.0925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.5e-07126149730
                      HHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   7 erErrRRdriNsafeeLrellPka 30 
                       r +rRR++iN++f  L++l+P +
  LPERR12G14980.1 126 RRVKRRRSKINEKFKMLQQLVPGC 149
                      6779******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.042119157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-5124153No hitNo description
PfamPF000101.1E-4125149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-6129153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-7129152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSLPPYSGDL GDAAGADIFT LDQMFGDFGY TCDDLFELAW EETGGGETMP ASSGVPCCHL  60
LLPQTTAAPE SEMPLPEDEM AAWLSAIVTG DDAVEVAVVT GDPAANSGEE FRERIENKLP  120
TRTEERRVKR RRSKINEKFK MLQQLVPGCD KLSLNAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619633.13e-38transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLA0A0D9Y1511e-112A0A0D9Y151_9ORYZ; Uncharacterized protein
STRINGLPERR12G14980.11e-113(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165781111