PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 163aa    MW: 18811.3 Da    PI: 9.6696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.11.2e-1693140355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++hn  E+rRR riN+++ +L++l+P +      K + a++L k+++Y+ksLq
  LPERR12G14990.1  93 ETHNLTEKRRRCRINEKLKTLQQLVPGC-----DKSNQASTLDKTIRYMKSLQ 140
                      69*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-1888151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.73690139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1493140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.11E-1593144No hitNo description
Gene3DG3DSA:4.10.280.105.9E-1893145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1596145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSAWIYPIAP GDELTAVDRQ MLVASGEEHG VKVYDQAPAP AKDGGDQRWL TPEIRMEKVH  60
THLEGICVPE TRCISNHERR KTSRARRSSR YSETHNLTEK RRRCRINEKL KTLQQLVPGC  120
DKSNQASTLD KTIRYMKSLQ QHLQVDRFSH ISAHSSYFYI GFT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806979.18e-25putative transcription factor bHLH056
TrEMBLA0A0D9Y1521e-120A0A0D9Y152_9ORYZ; Uncharacterized protein
STRINGLPERR12G14990.11e-121(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.13e-17bHLH family protein